Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02112 ATGGACGCACCTCGTAAGCAGCAGGTGTCGTTGAGAGGAGCAAGTGCGAAGGAGATAACGCGAGACGCCCTTCTTCAGAAGGTCTCTCAGGAAAGAGAACTTCGCAATTATGCAAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGTCACAAAGACAGTTTCTCTGCAACTTCAGCGAGAGTGGGAGATAGCAGTGAATCATTATACTGGTCTGATGACAGCAAATTGGATTTCAAACAATTTGTTGAGACCTTTTCTGTTCTTCATTACCCGTATCTCCACTCAGCATCAAAAGGCCCACTGCAAGAGAATAGATTCTATGAAACTGTGCTTTACAATCGTACTGGAAAGCCTGAAATCTTCTGATTCAAAGCTGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAAAGAAGAATGTGGAGATACCAGGCACACAAGCTGACTTCTCTTAGTTTTCTTATTCTTTCAGAGTTCAGTGAATGTCCTCCCGGAGCCCAAGATATTACTATTGTTACATCTCTATCTATGCGTGTTCTTGTAATGTTAACTGATCTGCAAGGATGGAAAGGAATTACAAATAACAACCACTTTGATGCAGATTTAGCAGTGAAAGATTTAATTCAGTTCATGGGCTGTGATAAAAGTGGTTGTTATGTGTCTATTGGCAGATATATTAGCGCATTAGAAAATCATTCTTCTCAGTCAAAGACCATCACCCAGGCAGATGAAATTTTTTTCATTACTGCAAGTGCAATAACTTTAGCTGTACGGCCTTTTTATCTGACAAACTATGATGCAGAAGCGCCTCGTACGCTGGATTTCAACAATGCTGCTGAGCAGTATATTGTTTCTCTGCTGACTATACCTTGGCTAGTGCAACGTCTCCCCCCTGTTCTTCTACCAGCCTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTCTATTGATTTTGAAAGAGAAAGTTTTGATGGAGAAGATGTCAGGGTTCATCAAATCAGAGATTCCTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTCGCTAACATCATCTGCTTAGCAACAGTGAATGAGAATGAATCCTTCAATCAAGGTTTAGACCATGGATTGTATGTCCATGTTGTTATTTCTCTATCAGAGGCTCTGCTGGCTTGTCTTGATAATATTGGATGGGTCAGAAAGAAAAAGAAAGCCCTTCAAACTGATGTTGAAAATTCAACACAGCCAATTGATGCAGTTCAGCACGAGGGTGAAGCAACCAATGAATCCTTAATATTGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAATTCTTTTGGCATCAATTGATAGAGATTCCAATAACATGGCTGCGACTGTGCTCTCAAGTAGCCTGGAATGTCTGGGGAACCTTGGATTGTGTGATATTGCACTTTTTTATTCTAACTTACTTAGAATATTTTCAGTCTTGAGTCCAATTCGTGGCTCATTATCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGAGTGTACTGGAGGGTTCCTTTTTTTCTGGAGACAAACATAATTCTGATAATTACACAAGTGAAAACAGCAAACATAAAGTCTTTGAGAAGATGCAAAAACAAGTCAGTAAAGATGGGCCTAATAAGTGGGTCAATGTACTTCAGAGATTTACGGGAAAGTCACAAGCAGCAACAGATTGCACTAATTTTATTGACAGTCACACTGAGTCTAGCAGAGTGAATGAGGATTCATCAGACATATGGGACATAGAACCTATGAGGAATGGGCCGCAAGGCATTCCAAAGGATATGTTTTCTATGCTTCATCTTTTCTGTGCGACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCATTCCAAATAGAGCAGCAAAGAAGAATAGCGTGTATGCTCAATACCTTGGTTTATAATGGCTTGTCCCATGTTGGTGGTCATCATAATAAGCCCCTAATGGATTGTGCTGTCAGATGCTTGCATTTACTGTATGAAAGGGATTGCAGACACCCATTTTGTCCTCCTGCTTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCTGTTGCTGCCAGAACTCATGAAGCTTTAGCAGCCAACCTGAGATATGATGATTCATCTGCTTCGCTGAGTGCTGGTTCTGTTGTCACTATTGTTCCTCACGTTTTCCCTTTTGAGGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCATCTCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCGCGAGCCATTGAGATTGTAGTACGCCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCCATCCATGTATCATTTGTTAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACTTGTCAAAAGCAGCATTTGCTCCTGAATATGGTCTCTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTGCGTCTGCCAGATATCTGGAGAATGGTCTTCAGATGATTGAATTCCTTGGAAGAGTAGTCGGTAAAGCTCTATATGAAGGGATATTACTCGATTTCTCTTTCTCCCATGTTTTTGTACAAAAGCTTTTGGGACGATATAGTTTTCTTGTTGAATTATCAACACTTGATCCAGAGTTATACAGGAATCTTATGTATGTCAAGAATTATGATGGTGATGTCATGGAGCTCTGTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGGTTGAACTCAAGTCTGGTGGCAAAGATATTTCTGTGACGAATGAGAACAAGATGCAGTACATGCATGCAATGGCAGACTACAAACTCAACCAACAGATGTTGCCCTTTTCAAATGCGTTTTATAGAGGGTTAACTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGATGTTGATGATTTGAAAAATAACACTCGTTACACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATTTTTTGGGAGGTAATTAAAGGCTTTAAACCTGAAGAGCGTTGTTTGCTTCTTAAATTTGTCACTAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCACTAACCATCCACAAGGTTGCTTGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTTAAGCTTCCAACATACAAACGTCCAGGCACCTTGAGGGCAAAGCTTCTATATGCTATCAGTTCAAATGCGGGATTCGAACTTTCTTGA 3477 0.409 MDAPRKQQVSLRGASAKEITRDALLQKVSQERELRNYAKRAAAAALFIQRVWRRFKVTKTVSLQLQREWEIAVNHYTGLMTANWISNNLLRPFLFFITRISTQHQKAHCKRIDSMKLCFTIVLESLKSSDSKLNFCFLAIGTTEERRMWRYQAHKLTSLSFLILSEFSECPPGAQDITIVTSLSMRVLVMLTDLQGWKGITNNNHFDADLAVKDLIQFMGCDKSGCYVSIGRYISALENHSSQSKTITQADEIFFITASAITLAVRPFYLTNYDAEAPRTLDFNNAAEQYIVSLLTIPWLVQRLPPVLLPALKHKSILFPCFQTLLILKEKVLMEKMSGFIKSEIPVSFKAIPPVGWALANIICLATVNENESFNQGLDHGLYVHVVISLSEALLACLDNIGWVRKKKKALQTDVENSTQPIDAVQHEGEATNESLILSYMDQFRPVCQQWHLKILLASIDRDSNNMAATVLSSSLECLGNLGLCDIALFYSNLLRIFSVLSPIRGSLSVLNMLSFTPGFLVRLWSVLEGSFFSGDKHNSDNYTSENSKHKVFEKMQKQVSKDGPNKWVNVLQRFTGKSQAATDCTNFIDSHTESSRVNEDSSDIWDIEPMRNGPQGIPKDMFSMLHLFCATYSHLLLVLDDIEFYEKQVPFQIEQQRRIACMLNTLVYNGLSHVGGHHNKPLMDCAVRCLHLLYERDCRHPFCPPALWLSPARKSRPPIAVAARTHEALAANLRYDDSSASLSAGSVVTIVPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDLSKAAFAPEYGLFSQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDFSFSHVFVQKLLGRYSFLVELSTLDPELYRNLMYVKNYDGDVMELCLDFTVTEESLGKRYVVELKSGGKDISVTNENKMQYMHAMADYKLNQQMLPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDVDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFKPEERCLLLKFVTSCSRAPLLGFKYLQPPLTIHKVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRAKLLYAISSNAGFELS 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02112 1158 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 1158 IPR044611 GO:0000209|GO:0061630
Phco2g02112 1158 SMART hect_3 808 1158 IPR000569 GO:0004842
Phco2g02112 1158 FunFam E3 ubiquitin-protein ligase UPL7 1033 1157 - -
Phco2g02112 1158 SUPERFAMILY Hect, E3 ligase catalytic domain 790 1151 IPR035983 GO:0004842
Phco2g02112 1158 Gene3D Hect, E3 ligase catalytic domain 1033 1157 - -
Phco2g02112 1158 CDD HECTc 790 1156 IPR000569 GO:0004842
Phco2g02112 1158 FunFam Putative Ubiquitin-protein ligase E3C 916 995 - -
Phco2g02112 1158 Pfam HECT-domain (ubiquitin-transferase) 845 1158 IPR000569 GO:0004842
Phco2g02112 1158 ProSiteProfiles HECT domain profile. 814 1158 IPR000569 GO:0004842
Phco2g02112 1158 Gene3D Hect, E3 ligase catalytic domains 792 1030 - -
Phco2g02112 1158 Gene3D Hect, E3 ligase catalytic domain 916 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02112 Phco-Chr2 51899086 51908817 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02112 2 51899086 51908817 Phco2g02112 2 51899086 51908817 ECH