Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02081 ATGGCTTTCCCCTGGGGAGCCCTCGTGACCACAACATTACTCTTTCTTGTTGCATTCTCATTTCCTTATGTCCATTCAGCTGATGAAAATATTGGCAAATACAACAAGAAAGGTGACCTCAGAAAGCATCGTCCTCGTTTTAAGCCTACTGTATGGAAGCAAGCTCATGCTACCTTCTATGAGGGAGGCTCTGAAACATTTGGTGGAGCTTGCGGGTACGAGGATGTGGTTAAAGATGGCTATGGCCTAGACACGACGGCATTGAGTTCAGTTTTGTTCAAGGACGGACAGACATGTGGCGCATGTTACGAGATCAAATGCGTAAAATCTGGTGAGGGATGTAAGGCAGGGAAATCCTCTATTTTGGTGACGGCAACCAACCTTTGCCCTCCTAACTATAATGAGCCAGGTGATAATGGAGGATGGTGCAATCCACCACGCGAACACTTTGATTTGGCCAAACCAGCATATCTCAAAATTGCAGAGTACAAGGCTGGCATCGTTCCAATCCAATATCGCAGGGTACCGTGCCAGAAGAAAGGAGGGATTCGGTTTACGATCACTGGGAATCCTTATTTCAATCTAGTATCAGTGTGGAATGTTGGAGGAGCTGGGGAGATCACACAAGTGCTGGTGAAGGGTGATCAGAAAGTCAAGAATTGGACAAATTTGAAGAGAAATTGGGGTCAGAAATGGGAAAGTGATGAGATGTTAGTGGGAGAAACATTGTCTTTCAGAGTGAAAGCTAGTGATGGAAGGTACACTACCTCTCTCAGGATTGCTCCCAAGAATTGGAAATTTGGTCAAACTTTTGTAGGCAAAAACTTCCCTTAG 834 0.452 MAFPWGALVTTTLLFLVAFSFPYVHSADENIGKYNKKGDLRKHRPRFKPTVWKQAHATFYEGGSETFGGACGYEDVVKDGYGLDTTALSSVLFKDGQTCGACYEIKCVKSGEGCKAGKSSILVTATNLCPPNYNEPGDNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPIQYRRVPCQKKGGIRFTITGNPYFNLVSVWNVGGAGEITQVLVKGDQKVKNWTNLKRNWGQKWESDEMLVGETLSFRVKASDGRYTTSLRIAPKNWKFGQTFVGKNFP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02081 277 Gene3D - 39 178 IPR036908 -
Phco2g02081 277 CDD DPBB_EXPA_N 52 177 - -
Phco2g02081 277 PANTHER EXPANSIN-A15 21 276 IPR002963 GO:0009664
Phco2g02081 277 Gene3D - 179 276 IPR036749 -
Phco2g02081 277 SUPERFAMILY Barwin-like endoglucanases 51 200 IPR036908 -
Phco2g02081 277 Pfam Expansin C-terminal domain 183 262 IPR007117 -
Phco2g02081 277 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Phco2g02081 277 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Phco2g02081 277 Pfam Lytic transglycolase 86 172 IPR009009 -
Phco2g02081 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 273 IPR007117 -
Phco2g02081 277 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Phco2g02081 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Phco2g02081 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Phco2g02081 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Phco2g02081 277 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Phco2g02081 277 SUPERFAMILY PHL pollen allergen 179 272 IPR036749 -
Phco2g02081 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 182 IPR007112 -
Phco2g02081 277 SMART dpbb_1 85 172 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02081 Phco-Chr2 51561822 51563599 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02081 2 51561822 51563599 Phco2g02081 2 51561822 51563599 ECH