Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g02080 | ATGGTGAAGGCCTACCTCCGATTCGAGCCGGCGGCGTCGTTTGGGGTGATAGCCTCAGTGGATTCCAACATAGCATACGACAGTTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAGATCGGCGTCTGGCACGTGCGGCAGGGCCTCTGCTCAAAAACCCTAACACCTTCCACTGCGTCGCCCGGTCCTTCCCTCGCCGTCACCTCCATTGCTTCCTCCTCTTCTTCATTGATTGCTGGTGGTTACGGGGATGGTAGCATACGGATTTGGGACTCTGACAAAGGAGCGTGTGAGACTACGCTAAATGGACACAAGGGAGCTGTCACCGCTCTTCGTTACAACAAGGCTGGTTCCTTGCTGGCCTCTGGTAGCAAGGATAATGATGTTATTTTATGGGACGCGATTGGCGAGACTGGGCTCTTTCGCCTTCGCGGTCATCGTGACCAGGTGACTGATGTTGTTTTTTTGAATTCTGGGAAAAAACTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATGCAAATTGTGGGTGGACATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGGTATCTGGTCACTGGTTCTGCAGATAATGAACTTCGTTTTTATGTAATCAGACATGAGTCTGTGGATGGGGAGTCTGTAAAGGGTGGTGAAGAATCTTCCATTCAAAGCAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGACAAAGTAAGGATAGGGTTGCAACGGTGCAGTTCAACAAGTCAGGAAATCTGCTAGCTTGCCAAGTTGCCGGAAAGACAGTAGAAATATATTGTGTATTGGATGATGCTGAAGCAAAGCGCAAGGCAAAACGAAGGGTTCACCGAAGGAAAGAGAAGAAACATAGTAAAGAGGTTTCAGAGGTAGTAGAAAATGGGGACGGGAATAATGTTAACAAAGGAGATAATTCTTCTGTCACTCATGCGCTCACAGAAACAACTAATCCTTCAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATTAGAGCTAACAAAAAGATATGCTCCCTTTCTTTCTGTCCAATCACTCCAAAAAATTCATTGGCTAGTTTAGCATTGTCTCTGAACAATAATCTTCTTGAGGTTTATTCTATTGAACTTGGTGAATCAAAAAAAACACTTGCTATTGATCTTCAGGGCCATCGCTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAATTACTGGCTCTTGCCTAAGGACCATTGATTCTGGATATGGACTGTGCAGTTTAATTCTTCCCACTAACAAGTATGGAGTTGTCGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGCACTTGTGTTGAAGTAATGGAAGCTCATGGTGGCTCTGTTCGCTCAATTACTGCCCTACCTCATAAAAATGGTTTTGTCACAGGAAGTGCCGATCATGATGTCAAATTTTGGGAGTACCAATTTAAGCAAAAACCTGGTCAAGCTACTAAGCAACTTGTAGTGTCAAATGTCAGTACCATGAAAATGAATGATGACGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTATTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTTTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGCTCTGCAGATAAAAATTTAAAGATTTGGGGTTTAGACTTCGGTGACTGTCATAAATCCCTTTTTGCTCATGCTGACAGTGTTATGGCAGTACAATTTGTTCCCAGGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATACTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTAGAAGGGCATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGAGGGGATTTCATCGTCACTGGATCTCATGATCGTTCTATCCGTCGCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATCTTGACAATGCATTTGAAAACAAGTATGCATCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTACTGCAACTGACTTGATTATTGAAAGATTAGACATCGCAGAAGCTGAAAACAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAAACATGTTGCTGTTTTCCAATCAAATCCGCTTATGAATGGGCTTTCACCTTCTGATTATGTTTTAAGTGCATTTTCTAATGTTCACTCCAACGATTTGGAGCAAACATTACTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTCTCGTACTTGAAAGACTGGACTTCATATTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGTACGCTGCTGTTGCAGACACACTACAACCAGCTTCTTGCCACACCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTTATGAAAGGGTCAAGGCATGGAAAGATATCTTTGGTTTTAACCTCGCAGCCATGGATCATATTCAGCAATTGATGGCATCAAGATCGGATACTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGACAATCCAAACGTTTAGAAGAAAGGTCACAAACCGGAGAAGTGAAGCGGAAGAAGAAAAAGACATAA | 2835 | 0.4293 | MVKAYLRFEPAASFGVIASVDSNIAYDSSGKHLLSPALEKIGVWHVRQGLCSKTLTPSTASPGPSLAVTSIASSSSSLIAGGYGDGSIRIWDSDKGACETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDAIGETGLFRLRGHRDQVTDVVFLNSGKKLVSSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYVIRHESVDGESVKGGEESSIQSKWEVLRHFGEIQRQSKDRVATVQFNKSGNLLACQVAGKTVEIYCVLDDAEAKRKAKRRVHRRKEKKHSKEVSEVVENGDGNNVNKGDNSSVTHALTETTNPSVTVPDVFKLLHTIRANKKICSLSFCPITPKNSLASLALSLNNNLLEVYSIELGESKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPITGSCLRTIDSGYGLCSLILPTNKYGVVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSITALPHKNGFVTGSADHDVKFWEYQFKQKPGQATKQLVVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSLFAHADSVMAVQFVPRTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYASKEEIPEEGAVALAGKQTQETLTATDLIIERLDIAEAENKRIAEHQEEKNNKHVAVFQSNPLMNGLSPSDYVLSAFSNVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLATPAARPILTVFSDIFYERVKAWKDIFGFNLAAMDHIQQLMASRSDTLFHDARSKLLEIRARQSKRLEERSQTGEVKRKKKKT | 944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 664 | 696 | - | - | |
| Phco2g02080 | 944 | SMART | WD40_4 | 240 | 283 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 179 | 218 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 48 | 92 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 397 | 435 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 438 | 475 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 137 | 176 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 532 | 570 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 615 | 654 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 657 | 696 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 95 | 134 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 478 | 517 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SMART | WD40_4 | 573 | 612 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 404 | 444 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 144 | 179 | - | - | |
| Phco2g02080 | 944 | Coils | Coil | 761 | 781 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 622 | 654 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 580 | 621 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | FunFam | WD repeat domain 3 | 449 | 641 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 102 | 134 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 144 | 185 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | MobiDBLite | consensus disorder prediction | 314 | 336 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 102 | 134 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | PANTHER | WD REPEAT CONTAINING PROTEIN 3 WDR3 | 4 | 942 | - | - | |
| Phco2g02080 | 944 | MobiDBLite | consensus disorder prediction | 296 | 336 | - | - | |
| Phco2g02080 | 944 | Gene3D | - | 108 | 239 | IPR015943 | GO:0005515 | |
| Phco2g02080 | 944 | Coils | Coil | 285 | 305 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 622 | 663 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SUPERFAMILY | Quinoprotein alcohol dehydrogenase-like | 70 | 701 | IPR011047 | - | |
| Phco2g02080 | 944 | Gene3D | - | 240 | 520 | IPR015943 | GO:0005515 | |
| Phco2g02080 | 944 | CDD | WD40 | 404 | 696 | - | - | |
| Phco2g02080 | 944 | Pfam | Dip2/Utp12 Family | 799 | 899 | IPR007148 | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 580 | 614 | - | - | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 404 | 435 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 479 | 516 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 97 | 134 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 142 | 176 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 62 | 92 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 578 | 611 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 181 | 217 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Pfam | WD domain, G-beta repeat | 659 | 696 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 664 | 696 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | SUPERFAMILY | WD40 repeat-like | 253 | 446 | IPR036322 | GO:0005515 | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 485 | 517 | - | - | |
| Phco2g02080 | 944 | SUPERFAMILY | Putative isomerase YbhE | 22 | 92 | - | - | |
| Phco2g02080 | 944 | CDD | WD40 | 98 | 517 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 186 | 217 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 163 | 177 | IPR019775 | - | |
| Phco2g02080 | 944 | FunFam | Transducin family protein / WD-40 repeat family protein | 335 | 448 | - | - | |
| Phco2g02080 | 944 | PRINTS | G protein beta WD-40 repeat signature | 163 | 177 | IPR020472 | - | |
| Phco2g02080 | 944 | PRINTS | G protein beta WD-40 repeat signature | 683 | 697 | IPR020472 | - | |
| Phco2g02080 | 944 | PRINTS | G protein beta WD-40 repeat signature | 599 | 613 | IPR020472 | - | |
| Phco2g02080 | 944 | FunFam | WD repeat-containing protein 3 isoform A | 650 | 708 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 485 | 517 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | FunFam | Transducin family protein / WD-40 repeat family protein | 60 | 320 | - | - | |
| Phco2g02080 | 944 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 73 | 101 | IPR001680 | GO:0005515 | |
| Phco2g02080 | 944 | Gene3D | - | 525 | 755 | IPR015943 | GO:0005515 | |
| Phco2g02080 | 944 | Gene3D | - | 17 | 107 | IPR015943 | GO:0005515 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g02080 | 2 | 51551499 | 51560429 | Phco2g02080 | 2 | 51551499 | 51560429 | ECH |