Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02048 ATGGGAGAGAAAAAAGGAAAGGCGAAGAATGAGGGCGATAATATGCCTGAATCGGGAGGAAAGCAAAATGACGTACCCGCCCCTGTCGTTTTGATACTCAATTTGCATTGCGAGGGATGCGCCAAGAAGATCAAACGTGCCGTTCGCAATTTACACGGTGTGGAAGACGTTAAGGCCGATCTATTTGGTAACAAGCTAACGGTTATTGGGAAGGTCGACCCTGCCGTAGTGCGAACTAAACTAGCGGACAAGACTGGGCAGAAGGTAGAGATTATTTCTCCTCAACCGAAGAAAGATTCCGGCGCCGCCAATAAACCACAGGAGAAAAAGGTGGAAGAGAAGATAACAGAAGAGAAGAAGCCGGCAGATAAGAAAACTATAGGAAAAACCCCAAAACAGGGCCCGGTGGTGTTGAAGATCCGATTGCACTGTGAAGATTGCATTCAGAAAATTCGAAGGGTTATCCTCAAGATCAAAGGGGTTGAATCGGTGAACATAGATGTAAAGAAGAACTGGGTGAGCGTAAATGGCACGATGGAGGTGAATGGAATGGTGGCGTATCTGGAAGAAAAGCTGAGGAGGAAGGTTGAGGTGGTCCCAGTCAATAAAGAGAGTGAAAAGAAAGAGGATAATAAGGAAGAGAAGGTGAAGGAGAAGAAAGAAGGTGGTGGTGTTAAGAAAGGGGGTGGAGAAAAAGAGGGTGTACCGAAGGTTGAGGTTAATAAAATGGAGCTCTACGGGTACGCTTACCCACCTCCACCTATGTACTGGTACGACGGTTATGGACCAGGTCAAAGTAGTAGTGGTGGTGGTTACTCGGTAGAGGTTCATCCAGGGTATGACAGTAATTACGGGAACTACCATGACCAATACCAGAATGGGTATGGAAACCAAGGGTACATGGTACAGCCACATCCGCAACCACAACCGCCATTCTACTTGAATCCTCATCATCCTCCACCGCAGATGTTTAGTGATGAGAATCCTAATGCTTGTTTCGTTATGTGA 1008 0.4653 MGEKKGKAKNEGDNMPESGGKQNDVPAPVVLILNLHCEGCAKKIKRAVRNLHGVEDVKADLFGNKLTVIGKVDPAVVRTKLADKTGQKVEIISPQPKKDSGAANKPQEKKVEEKITEEKKPADKKTIGKTPKQGPVVLKIRLHCEDCIQKIRRVILKIKGVESVNIDVKKNWVSVNGTMEVNGMVAYLEEKLRRKVEVVPVNKESEKKEDNKEEKVKEKKEGGGVKKGGGEKEGVPKVEVNKMELYGYAYPPPPMYWYDGYGPGQSSSGGGYSVEVHPGYDSNYGNYHDQYQNGYGNQGYMVQPHPQPQPPFYLNPHHPPPQMFSDENPNACFVM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02048 335 CDD HMA 142 197 IPR006121 GO:0046872
Phco2g02048 335 SUPERFAMILY HMA, heavy metal-associated domain 29 91 IPR036163 GO:0046872
Phco2g02048 335 MobiDBLite consensus disorder prediction 202 233 - -
Phco2g02048 335 Pfam Heavy-metal-associated domain 31 80 IPR006121 GO:0046872
Phco2g02048 335 Pfam Heavy-metal-associated domain 139 197 IPR006121 GO:0046872
Phco2g02048 335 MobiDBLite consensus disorder prediction 91 130 - -
Phco2g02048 335 Gene3D - 25 99 - -
Phco2g02048 335 Gene3D - 133 207 - -
Phco2g02048 335 Coils Coil 201 222 - -
Phco2g02048 335 MobiDBLite consensus disorder prediction 1 24 - -
Phco2g02048 335 SUPERFAMILY HMA, heavy metal-associated domain 137 190 IPR036163 GO:0046872
Phco2g02048 335 ProSiteProfiles Heavy-metal-associated domain profile. 26 89 IPR006121 GO:0046872
Phco2g02048 335 CDD HMA 32 90 IPR006121 GO:0046872
Phco2g02048 335 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 5 335 IPR044594 GO:0046872
Phco2g02048 335 ProSitePatterns Heavy-metal-associated domain. 32 61 IPR017969 GO:0046872
Phco2g02048 335 ProSiteProfiles Heavy-metal-associated domain profile. 133 204 IPR006121 GO:0046872
Phco2g02048 335 MobiDBLite consensus disorder prediction 102 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02048 Phco-Chr2 51204046 51205626 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02048 2 51204046 51205626 Phco2g02048 2 51204046 51205626 ECH
Phco2g02048 2 51204046 51205626 Phco6g00655 6 6507768 6509235 PCT