Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01998 ATGCTGGATCTTAACCTCAACGCCGATTCCCCCTCCGACAACAACCACACACCTCCGCTCTCCGTCGCTCAAATGGAGAGCTCCGGAAGCTTCAGTTCCTCCGTCGTCAATGCTGCCGACACCGATGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAACAGCGCCTCCTTCTCCGCTGGAGAATCCTCCGTCCGCACTATCCAGCTCTTTCCGGCGACCGACTCCGGTGTCTCGCCGGCTTGGCTGGATGTCTCATCGAAGGTGGATCAGCACGGTGTCGCGGCGGAGCAGATGATCACTCCGCGGCAGCCGCAAGTGAAGAAGAGCCGCCGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTCACTTTCTATCGCAGAACAGGAAGATGGGAATCGCACATTTGGGATTGTGGCAAACAAGTGTACTTAGGTGGATTTGACACGGCGCATGCTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAGGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAGGCTCGTATGGGGCAGTTTCTGGGTAAAAAGTATATATATCTTGGGCTATTCGACAGCGAATTAGAGGCTGCAAGAGCGTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCATATACGAAGGGGAGGTGATTTCCCAATCTGATAATGAAGATGGCAAGCAAAATCTTGATCTTAACCTGGGCATAGCTCCCCCTTCTTACTCTGACAGTCAAATCAAGAACACACCCAGCAACGGGAGTGGTTTGAAAGCTCCACCCAACTGGGATGATAGCCCTGTCGAAAAGAGATTTATGTTTGAGCACTCTGGATCGAGATCACTGAATGTCCAGCCATCTCATGGCATCTCCAGAGTATCTGGGCATCATCCTTCCGCCTGGAATGGTAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCATGCCTAGTTGGGCATGGCAAGTCCAAGGTCCTTATGGCGGGGCAAGTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATAATCAAATTCATTTTCCAAACATGACATTCCTCCACTCACATTTTCCACCATCAATCACTAACTCGAGCTCTATATCCCCTTTCTTCATCGGTAGCTGA 1380 0.5101 MLDLNLNADSPSDNNHTPPLSVAQMESSGSFSSSVVNAADTDDSCSYGDAVAYNFAILNNSASFSAGESSVRTIQLFPATDSGVSPAWLDVSSKVDQHGVAAEQMITPRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSIYEGEVISQSDNEDGKQNLDLNLGIAPPSYSDSQIKNTPSNGSGLKAPPNWDDSPVEKRFMFEHSGSRSLNVQPSHGISRVSGHHPSAWNGSNFFPIYEETAIEKRMEAGPMPSWAWQVQGPYGGASLTPPFSTAASSGFPSTIIPSAADNQIHFPNMTFLHSHFPPSITNSSSISPFFIGS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01998 459 FunFam AP2-like ethylene-responsive transcription factor 217 277 - -
Phco2g01998 459 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Phco2g01998 459 Gene3D AP2/ERF domain 217 276 IPR036955 GO:0003700|GO:0006355
Phco2g01998 459 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Phco2g01998 459 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 318 - -
Phco2g01998 459 SUPERFAMILY DNA-binding domain 217 277 IPR016177 GO:0003677
Phco2g01998 459 MobiDBLite consensus disorder prediction 1 26 - -
Phco2g01998 459 MobiDBLite consensus disorder prediction 7 26 - -
Phco2g01998 459 MobiDBLite consensus disorder prediction 307 327 - -
Phco2g01998 459 FunFam AP2-like ethylene-responsive transcription factor 125 184 - -
Phco2g01998 459 ProSiteProfiles AP2/ERF domain profile. 126 182 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 ProSiteProfiles AP2/ERF domain profile. 218 275 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 CDD AP2 217 277 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 PRINTS Ethylene responsive element binding protein signature 257 277 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 PRINTS Ethylene responsive element binding protein signature 219 230 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 MobiDBLite consensus disorder prediction 307 324 - -
Phco2g01998 459 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 Pfam AP2 domain 217 267 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 SMART rav1_2 126 188 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 SMART rav1_2 218 281 IPR001471 GO:0003700|GO:0006355
Phco2g01998 459 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01998 Phco-Chr2 50660185 50662539 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco2g01998 AP2 1e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01998 2 50660185 50662539 Phco2g01998 2 50660185 50662539 ECH