Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01980 ATGCCTCGCTATGATGATAAATATGGCAATACACGCCTGTACGTGGGACGCTTGTCTCAGAATACCCGTTCCCGTGATCTGGAGCGTGTCTTCGGCAGATATGGAAGACTCATAACTGTTATTGCAGTGTTGAGGCCCAAAACACAGTTTGGGGCCGTCCTTTTAACTACCATAACTATCATGTTTGCTTATTGGCTTTGTTCTTTAGTACTTCATTTCTTGCTTAGAATGGGCAGGATGCCTTACGTTTCTATGGTTTTCTCTAAACCTGGAGGTCTGTGTTGGGAGGTTGGCCTTGGTGGAATTGATGGAAATTCCTGTCGAGTGTTGACTTTGGCGATTCTTTCTTTAAGTAATGATGGCCTTACTGTTTCTGGAAACCATTTCCGCAGAGTTCGAGGTGTGGATATGAAGAATGATTTCGCCTTTGTTGTAAGTTGCCCCCCTATTCTTGATCTTTTATCTATTTCTTTTGACTTCCATTTCTCCTCATGCCTTTGCTCCAAGGAATTTAGTGATCCTCGAGATGCGGATGATGCTAGATATAACTTGGATGGCCGTGACTTTGAAGGAAGTCGTATTATTGTTGAATTTGCCAAGGGGGGTCCTCGTGGTTCTCGGGAATACTTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAATGCTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAACAGTCCCAAAAAGCTGAGCACCAGGCGTGGACGGAGTCTTTCACGATCACCAGTCAGGTCATGGTCTCCTCGTCGTGGGAGAAGCAGGGATCGAAGCTACAGCCGTGACCGCAGCTACAGTCGATCTAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCGGCCCTCCAAGATAAGGAAGCATAGTGCATCACCAGACCGTAGCAGCCCACAGAAGAGAAGTGACACATCTCCCCCTAATGATGATAGGTTGGTCACTCAGCGAGATGGGTCTGACTTGAGTGATGGTCCAAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCGGAATGTGAGGGGCTATGATAGCCCTAAATCTAATGGGCGCAGCCGGAGCCCCAGCCGGAGCCCCAGCCGGAGCCCCAGCCGGAGCCCCAGCCGGAGCCCCAGCCGGAGCCCTAGGGATGATGACAGGAGCCCCATTGATGAGGATGATGACAATCCTCGCCGCTCACAATCACCCTAG 1308 0.5023 MPRYDDKYGNTRLYVGRLSQNTRSRDLERVFGRYGRLITVIAVLRPKTQFGAVLLTTITIMFAYWLCSLVLHFLLRMGRMPYVSMVFSKPGGLCWEVGLGGIDGNSCRVLTLAILSLSNDGLTVSGNHFRRVRGVDMKNDFAFVVSCPPILDLLSISFDFHFSSCLCSKEFSDPRDADDARYNLDGRDFEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSTRRGRSLSRSPVRSWSPRRGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPRPSKIRKHSASPDRSSPQKRSDTSPPNDDRLVTQRDGSDLSDGPRGKSRSPASPARDRNVRGYDSPKSNGRSRSPSRSPSRSPSRSPSRSPSRSPRDDDRSPIDEDDDNPRRSQSP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01980 435 MobiDBLite consensus disorder prediction 281 334 - -
Phco2g01980 435 FunFam Serine/arginine-rich splicing factor RS2Z32 240 288 - -
Phco2g01980 435 SUPERFAMILY Retrovirus zinc finger-like domains 211 259 IPR036875 GO:0003676|GO:0008270
Phco2g01980 435 Gene3D - 216 239 - -
Phco2g01980 435 Gene3D - 240 271 - -
Phco2g01980 435 MobiDBLite consensus disorder prediction 255 435 - -
Phco2g01980 435 MobiDBLite consensus disorder prediction 410 435 - -
Phco2g01980 435 ProSiteProfiles Zinc finger CCHC-type profile. 242 258 IPR001878 GO:0003676|GO:0008270
Phco2g01980 435 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 392 - -
Phco2g01980 435 ProSiteProfiles Zinc finger CCHC-type profile. 220 235 IPR001878 GO:0003676|GO:0008270
Phco2g01980 435 Gene3D - 4 215 IPR012677 -
Phco2g01980 435 MobiDBLite consensus disorder prediction 335 350 - -
Phco2g01980 435 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 211 239 - -
Phco2g01980 435 SMART c2hcfinal6 242 258 IPR001878 GO:0003676|GO:0008270
Phco2g01980 435 SMART c2hcfinal6 220 236 IPR001878 GO:0003676|GO:0008270
Phco2g01980 435 MobiDBLite consensus disorder prediction 384 409 - -
Phco2g01980 435 SUPERFAMILY RNA-binding domain, RBD 6 204 IPR035979 GO:0003676
Phco2g01980 435 Pfam Zinc knuckle 220 235 IPR001878 GO:0003676|GO:0008270
Phco2g01980 435 Pfam Zinc knuckle 241 258 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01980 Phco-Chr2 50516932 50519651 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01980 2 50516932 50519651 Phco2g01980 2 50516932 50519651 ECH