Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01952 ATGGCTTTTAGGTCTGGACTTCAGCGTCTACTACACCACACCCCACTTCTTCATTCGCATCATGCTTCCAGTCGTTTCGCCTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTCTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCATTTACTTCGTTTGGACAGCTGGTGGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCGAAGGGATTTGCCTTTGTAACCTATACAAGCATAGAAGAAGCTGAAAAGGCTAGAGAAGGGATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACAGTCTCGCCCCTCTGAATCAGGTTTCACTGTTAACAAAACAGTTGGGTGGGTAACCACGGCGCCACTTGAACAAGTGCGGCCATATCCAACCATTTTCTTCTCTTCTCAGGGTGTCATATTCCTGTGA 489 0.456 MAFRSGLQRLLHHTPLLHSHHASSRFASTLTSPKLFVSGLSRLTTDEKLKEAFTSFGQLVEAKVITDRASGRSKGFAFVTYTSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSRPSESGFTVNKTVGWVTTAPLEQVRPYPTIFFSSQGVIFL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01952 162 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Phco2g01952 162 FunFam RNA binding protein 20 133 - -
Phco2g01952 162 Gene3D - 18 134 IPR012677 -
Phco2g01952 162 PANTHER NUCLEOLAR PROTEIN 8 22 138 - -
Phco2g01952 162 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Phco2g01952 162 SMART rrm1_1 34 107 IPR000504 GO:0003723
Phco2g01952 162 SUPERFAMILY RNA-binding domain, RBD 31 130 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01952 Phco-Chr2 50199923 50205914 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01952 2 50199923 50205914 Phco2g01952 2 50199923 50205914 ECH