Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01945 ATGGTGGGTGTTGTTTCGTTGGTAACAGGGAGGGCTGGTGCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAAGTTACCCAAGGAATTGATGCTGCCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATCGGGTTGGAGACAACACGAGTGTTGGCACTTCGAAAGGTTCATGTGATCATTGCAGTACGAAACATGGTGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAAAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATCTGTGCTCACTCAATTCTGTAACATCCTTCGTCGACAACTTCATAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTAATGTTCTGCCCCTTCAAACTCTCAGAGGACGGGATTGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAAAAAATGAAACAAACTGCACAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTAAAAAGAAGGCGTATGGACAGTCCAAGCTAGCTAACATACTGCATACAAATGAGCTTTCTCATCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCAGTCCATCCAGGAGTGATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTTCTGAAGATCTTCACCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCATCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGAGGATTGCAATCAACGCAAGCCAAGTGCGCATGCCAAAAAAAAACATCTAGCAAAGAAACTCTGGGATTTCAGTAACGAGTTGATCAAATCAATTTCAAAAGTCTGA 972 0.4331 MVGVVSLVTGRAGASGFGSASTAEQVTQGIDAANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGKKKAYGQSKLANILHTNELSHRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFEDCNQRKPSAHAKKKHLAKKLWDFSNELIKSISKV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01945 323 PANTHER RETINOL DEHYDROGENASE 15 318 - -
Phco2g01945 323 CDD retinol-DH_like_SDR_c_like 36 297 - -
Phco2g01945 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Phco2g01945 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Phco2g01945 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Phco2g01945 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Phco2g01945 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Phco2g01945 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Phco2g01945 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Phco2g01945 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Phco2g01945 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Phco2g01945 323 Gene3D - 26 320 - -
Phco2g01945 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01945 Phco-Chr2 50175587 50179160 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01945 2 50175587 50179160 Phco2g01945 2 50175587 50179160 ECH
Phco2g01945 2 50175587 50179160 Phco6g00772 6 7664947 7667824 PCT