Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01924 ATGCGGAGAGTTAGAGAGAGAGAGAGAGAGATCTCGAGAGAGGGTTTTGAAACGGAAGAGAAGGAGGTGAGTGGAGAAGGGAAGAGGAAGAAGAGTGGGGTGGGGGAGTTGAGAGCTTTTAATGCTTGTGGGAGTGTTGTTGACAGTGATACGTTTCGGAGTTTTACGCTTGATCCTATTCTTAGCTTCCATTTGATTCTTTTCGCCATCTTCTGCACACGTCTAGGTTTACCTTTTGCTTTTCTTTTTCCCGATTCTCCGAATTCTATTCACCAAATTGTCTGCGTTTCGATTTGTTCTCGTTTTATACATGCATCTTATTCGTGCATGGAGAATCCTTGTGAGGTACTCGGTACCGAAGGGTTGATTAGAAGGCATGAATTTGTGAGGATCATAATTCAGTGTCTATATTCATTAGGTTACACTAACTCTGCCTCCTGTTTGGAATTAGAATCTGGCATTTCGCACAGGTCCAATGAGCTTAAGTTGCTTGAGTCGTTTATATTGAATGGGAAGTGGGACGATAGCATTGAATATCTCAATTCCATAAAGGATGTGTTGGGGGAAACAAAGGAATCTGCCATGCTTCTTGTTTTCAGACAGTGTGTTATGGAGTATTTGAATTGCGGTGAAGATGCGTTAGCTTTAGGGGTGTTAAGGAAACAGGTTTCTGCCTTGGATGTGGACAAGTGCAAAGTTCACAGTCTGGCTATGTGCATGCTTTCATTTAAGGATAGGGAGTTAGCTGCAGTTAATCATGACGATGTTGTTGTACATGATCTGAGAAGCAAGTTGTTGGCGGATTTGGAAAATTTGTTGCCTCCTCCGATATCAGTGCCTGAAGCAAGGCTTGAGCACTTGGTAGAATCTACTGTTACGGCCTGGGTCGATTCGTGTAAGTATCATAGTTCGTCGAATCGGATATCGCTTTATGAGGATCATTGCTGCAGCAGGGATCAGATTCCTACTAGAACGACTCAGATATTGACTGGACACAAACATGAAGTTTGGTTTGTTCAATTTTCAAATAATGGGGAGTACCTAGCCTCTTCATCCAATGATTGCACAGCCATGATATGGAAGGTGCTGGAGGATGGCATATTGACACTGAAACATACACTTAATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTACTAACATGTGGGAACACAGAAGTTTTGAAGCTATGGGACGTTGAAACAGGTACATGCAAGCGTACATTCGGGAATCAAGGCTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTTCTGACCCTGAAAAGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATCAAATCGTGGAGAGGAATGAGGATGCCCAAGGTTGTAGATCTTGCTGTTACTCCAGACGGTGAATATCTTATCAGCATCTTTCTAGATAAAGAAATTCGTATTCTGCATATGGGAACAAATTCAGAGCGAGTCATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGATAGTAAGTTCTTCATTGTCAATCTCAACAGTCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGATAAGCCATCCAGGTTTAAGGGCCACAAGCAACACAAGTATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACTTTTATCGCCAGTGGTAGTGAAAATTCACAGGTATATATTTGGAACCGTCGGAATCCGACACCGATAGAGGTTCTATCTGGGCACTCCATGACTGTGAACTGTGTGAGCTGGAACCCCAAAATACCACAAATGCTGGCATCTGCTAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTCCAAAAAAAAGAAGGTGAAGTTGAGTAG 1899 0.4308 MRRVREREREISREGFETEEKEVSGEGKRKKSGVGELRAFNACGSVVDSDTFRSFTLDPILSFHLILFAIFCTRLGLPFAFLFPDSPNSIHQIVCVSICSRFIHASYSCMENPCEVLGTEGLIRRHEFVRIIIQCLYSLGYTNSASCLELESGISHRSNELKLLESFILNGKWDDSIEYLNSIKDVLGETKESAMLLVFRQCVMEYLNCGEDALALGVLRKQVSALDVDKCKVHSLAMCMLSFKDRELAAVNHDDVVVHDLRSKLLADLENLLPPPISVPEARLEHLVESTVTAWVDSCKYHSSSNRISLYEDHCCSRDQIPTRTTQILTGHKHEVWFVQFSNNGEYLASSSNDCTAMIWKVLEDGILTLKHTLNGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKRTFGNQGFVVSSCAWFPNSKQFACGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISIFLDKEIRILHMGTNSERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVDGKWDKPSRFKGHKQHKYVIRSCFGGLNNTFIASGSENSQVYIWNRRNPTPIEVLSGHSMTVNCVSWNPKIPQMLASASDDYTIRIWGPSFQKKEGEVE 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01924 632 ProSiteProfiles LIS1 homology (LisH) motif profile. 124 156 IPR006594 GO:0005515
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 362 IPR001680 GO:0005515
Phco2g01924 632 Pfam WD domain, G-beta repeat 410 449 IPR001680 GO:0005515
Phco2g01924 632 Pfam WD domain, G-beta repeat 542 578 IPR001680 GO:0005515
Phco2g01924 632 Pfam WD domain, G-beta repeat 584 620 IPR001680 GO:0005515
Phco2g01924 632 Pfam WD domain, G-beta repeat 325 361 IPR001680 GO:0005515
Phco2g01924 632 Pfam WD domain, G-beta repeat 370 406 IPR001680 GO:0005515
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 410 - -
Phco2g01924 632 SMART Lish 124 156 IPR006594 GO:0005515
Phco2g01924 632 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 157 214 IPR006595 -
Phco2g01924 632 SUPERFAMILY WD40 repeat-like 319 620 IPR036322 GO:0005515
Phco2g01924 632 CDD WD40 326 620 - -
Phco2g01924 632 Gene3D - 313 621 IPR015943 GO:0005515
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 362 - -
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 620 - -
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 415 IPR001680 GO:0005515
Phco2g01924 632 FunFam WD repeat-containing protein 26 homolog 316 621 - -
Phco2g01924 632 SMART WD40_4 367 406 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 452 492 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 581 621 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 494 532 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 322 361 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 409 450 IPR001680 GO:0005515
Phco2g01924 632 SMART WD40_4 536 578 IPR001680 GO:0005515
Phco2g01924 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 620 IPR001680 GO:0005515
Phco2g01924 632 PANTHER WD REPEAT PROTEIN 26-RELATED 112 624 - -
Phco2g01924 632 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01924 Phco-Chr2 49844044 49853966 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01924 2 49844044 49853966 Phco2g01924 2 49844044 49853966 ECH