Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01915 ATGAGGCTTCGTTCTAAAATTAGAATTGGGCTGAGAGAATTTTGTGTTGCGTTTTGTAGTGTGGAGAAAATGGAGGAGGATGGTGACATATACGACGGTGTTAGAGCTCAGTTTCCTCTGTCGTTCGGGAAGCAATCGAAACCTCAAACGCCTCTAGAAGCCATCCACAATGCGACACGTCGTTCCTCTTCCACTTCCAATCCCAATCCCAATTCCACCAACTCACTTCCTTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAATGCCCTCCGTCCTTCCAAAAACCCTATTCCACCGCCGCCTCCCGATCACCACGATGCCCCTATCGTGGGACCTCCTCCGCCTCCGCCCTCAGCTTCTGATGACGAGGACGAGGACGGCGACATGATTGGCCCGCCCCCGCCGCCACCGAACGCGTCGGAGTCCGAAGATGAATCGGATGTAGACGAGGTAGGGACCCGCTTCCGGATTCCTCTTACCAACGAGATTGTTCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACGGTACGAATGTATGACTTTCAAGGAATGAATGCTCGATTGGAATCGTTTCGGCAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGCGTGACTGGATCAGCTCAGGCAAAGATTTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTAAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCATATATCCGGACTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCACTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAGTGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAACATTAAGCCTGGTTGGGGGAGTAGGCCAGATCTACACATTGAAAAGGGTCATGAAGATGATATTAGTGGTCTTAAATTTTCTAGTGATGGAAGAATCTTATTGTCAAGGAGTTTTGATGGTTCACTGAAGGTTTGGGATCTACGCAAAATAAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCCGATGAGCAACTCTTTTTGACTGGAACATCTGTAGAAAGGGAGAGCACGACAGGAGGTTTATTGTGCTTCTTCGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCATCCACTTGCAGTGTTGTTCAGTGTTATTGGCATCCTAAACTAAATCAGATTCTTGCAACTACTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTAGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCATTACCACTATTTAGAGATCAGCCAAGCCGAAAGCGTCAGCGAGAGAAAGTACTAAAGGATCCATTTAAGTCCCATAAACCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGCATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATTCTGAAATATGCTGATGTTGCAGCAAAGGAACCAAAATTTATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1911 0.4563 MRLRSKIRIGLREFCVAFCSVEKMEEDGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSSSTSNPNPNSTNSLPSLSSSSREWLNALRPSKNPIPPPPPDHHDAPIVGPPPPPPSASDDEDEDGDMIGPPPPPPNASESEDESDVDEVGTRFRIPLTNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESTTGGLLCFFDRVNLELVSRVGISSTCSVVQCYWHPKLNQILATTGDKSQGGTHILYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPFKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADVAAKEPKFIAPAYAETQPEPVFAKSDSEDEEK 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01915 636 Pfam WD domain, G-beta repeat 359 393 IPR001680 GO:0005515
Phco2g01915 636 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Phco2g01915 636 Pfam WD domain, G-beta repeat 163 197 IPR001680 GO:0005515
Phco2g01915 636 Pfam WD domain, G-beta repeat 321 347 IPR001680 GO:0005515
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 165 199 - -
Phco2g01915 636 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Phco2g01915 636 CDD WD40 164 483 - -
Phco2g01915 636 MobiDBLite consensus disorder prediction 58 89 - -
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 395 - -
Phco2g01915 636 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Phco2g01915 636 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 30 635 - -
Phco2g01915 636 Gene3D - 114 254 IPR015943 GO:0005515
Phco2g01915 636 Gene3D - 255 494 IPR015943 GO:0005515
Phco2g01915 636 SMART WD40_4 207 244 IPR001680 GO:0005515
Phco2g01915 636 SMART WD40_4 158 197 IPR001680 GO:0005515
Phco2g01915 636 SMART WD40_4 354 393 IPR001680 GO:0005515
Phco2g01915 636 SMART WD40_4 303 347 IPR001680 GO:0005515
Phco2g01915 636 SMART WD40_4 256 299 IPR001680 GO:0005515
Phco2g01915 636 FunFam Nucleotide binding protein 112 253 - -
Phco2g01915 636 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Phco2g01915 636 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Phco2g01915 636 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 308 IPR001680 GO:0005515
Phco2g01915 636 FunFam WD repeat-containing protein 70 254 496 - -
Phco2g01915 636 SUPERFAMILY WD40 repeat-like 146 482 IPR036322 GO:0005515
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 165 206 IPR001680 GO:0005515
Phco2g01915 636 MobiDBLite consensus disorder prediction 93 118 - -
Phco2g01915 636 MobiDBLite consensus disorder prediction 58 150 - -
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 301 - -
Phco2g01915 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 395 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01915 2 49761161 49765530 Phco2g01915 2 49761161 49765530 ECH