Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01881 ATGGACGATTCCGCAAAACCTAACGCCGGTAAAACCAAGCTTCTCAATCCATGGATGCTTCACTTCCAGAAACTTGCTCTCGAACTCAAGTGCCCTCTCTGTTTGGGCTTGTTCAAGAGGCCGGTGTTACTTCCTTGCAACCACCTGTTCTGCGATTCATGCTTAGCTGATTGCATAACGGCTGGGACTGGTTCTGAATGTGCTGTTTGTAATGCAAAGTATGCTCAAACAGATGTAAGGCACGTGACTTTTGTGGAGAATGTGGTAGCAATATATAGAAGCTTGGAGGCCACCTTTTGTGCTAGTTTGTTTCAGCAACGTTCGTCTGGTGATGAGAGGGTTTTGGAGCCATGCCAAGCAGTTCTTAATTCAACTTCTAGTAGTATAAAAGCTGGCAAGCTTCCTCGGAATTTGCCTAATGTGAACAAGGTTGGGGTTGCCAAGAATCTCAAATCCAAGATTGCAGTGCATGATAGAGCTGAAGAGCTTGAGTTGTCTCATGGGAGAGGGAAGCCTAATCTGATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAGTCGGCCCCAGATAGCCCTCCTTTTTGCGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCATTACCTCCTGATAGACTGGGAAATTCTTCCTTAAAGAGAGCTAGTACAGGAAATGTAAATTTGAACGAGAAAATGGGACAATTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGAAAGGGATACCAAGAGACATAAAATTATTGACCATAAGTCTGGAAAGGACCCTGGTGCACAATTGCCAACAGATGCTCCAAATGACTTTTCTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCTAAAACCTCCGAGGCTACTGGACCAATGCTGCATTATGTTAATGGAAACTTAGTTAGTGGAGATGCAGCAATGAGGCCAAATGTTATTCCTGTGCACAGAAGTTGTATTGACTGGGCACCACAAGTGTACTTTGTTGGTGAAGTGGTTAAGAATTTGAAGGCAGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCATGCAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAACTTGTCGTTGGGATCATGAGGACTTTCTTTTGCTCTGTCCCCTCCATTCAAATGTCAAATTTCCATGTGAGAAATCCAGGTCTAAGAAACAGGCAGCTCGGAAGCATCCCGATTTGTCTCACCTGTCATCTCACAACTCAAATGCTCATGAAGCTTCACAGGATGATTGTAAAAATATTGTTTTCTGTGGATCTGCTTTATCAAATGAAGAAAAGGTACTTTTGATAGATTATGCAAGCACCATTGGTGCAACTGTAACAAAATTCTGGACCTCAAATGTTACACATGTAATTGCGTCAACTGATGCAAATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTTCTAAAATTGGATTGGATAAAAGCATGCATGGTAGAGAAAAATCTTGTAGAAGAACAACCATATGAAATTAGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAGGGCATTGGCCAACGAGCCAAAGCTATTCAGTAGCTTAAAATTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAATTGATTGAAGTGGGTGGAGGCACTGTCTTGAGAAGCAAGGAAGAATTGGAAGCGCAAAGACAGGAATGCAAAGTGAATTCTTCGAAGTCGCTGGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTGGGGGAAGAAGTATCAATTCTCTGGCAAAGGCTAAACGACGCAGAGGATTTAGCTGCTAATACTTTACAAGTGATTGGTCACACGTGGATTCTTGAATCAATTGCTTCATGTAAATTGCAGCCTTTTGTTAACTAA 2022 0.4233 MDDSAKPNAGKTKLLNPWMLHFQKLALELKCPLCLGLFKRPVLLPCNHLFCDSCLADCITAGTGSECAVCNAKYAQTDVRHVTFVENVVAIYRSLEATFCASLFQQRSSGDERVLEPCQAVLNSTSSSIKAGKLPRNLPNVNKVGVAKNLKSKIAVHDRAEELELSHGRGKPNLMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRASTGNVNLNEKMGQLRSESSASETEGLERDTKRHKIIDHKSGKDPGAQLPTDAPNDFSPTGSICSFCQSSKTSEATGPMLHYVNGNLVSGDAAMRPNVIPVHRSCIDWAPQVYFVGEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPLHSNVKFPCEKSRSKKQAARKHPDLSHLSSHNSNAHEASQDDCKNIVFCGSALSNEEKVLLIDYASTIGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMVEKNLVEEQPYEISVDNQGCQGGPRAGRLRALANEPKLFSSLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELEAQRQECKVNSSKSLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIASCKLQPFVN 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01881 673 ProSiteProfiles Extended PHD (ePHD) domain profile. 289 409 IPR034732 -
Phco2g01881 673 MobiDBLite consensus disorder prediction 184 278 - -
Phco2g01881 673 MobiDBLite consensus disorder prediction 224 249 - -
Phco2g01881 673 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Phco2g01881 673 FunFam Breast cancer associated RING 1 286 411 - -
Phco2g01881 673 FunFam Breast cancer associated RING 1 16 103 - -
Phco2g01881 673 SUPERFAMILY BRCT domain 452 539 IPR036420 -
Phco2g01881 673 SMART BRCT_7 561 666 IPR001357 -
Phco2g01881 673 SMART BRCT_7 446 528 IPR001357 -
Phco2g01881 673 CDD BRCT_Bard1_rpt1 452 531 - -
Phco2g01881 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 411 IPR013083 -
Phco2g01881 673 FunFam BRCA1-associated RING domain protein 1 561 666 - -
Phco2g01881 673 MobiDBLite consensus disorder prediction 250 270 - -
Phco2g01881 673 Gene3D BRCT domain 449 554 IPR036420 -
Phco2g01881 673 Gene3D BRCT domain 561 666 IPR036420 -
Phco2g01881 673 SUPERFAMILY BRCT domain 563 671 IPR036420 -
Phco2g01881 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 103 IPR013083 -
Phco2g01881 673 ProSiteProfiles Zinc finger RING-type profile. 31 71 IPR001841 -
Phco2g01881 673 Pfam BRCT domain, a BRCA1 C-terminus domain 561 670 IPR001357 -
Phco2g01881 673 Pfam PHD-like zinc-binding domain 330 409 - -
Phco2g01881 673 SMART ring_2 362 408 IPR001841 -
Phco2g01881 673 SMART ring_2 31 70 IPR001841 -
Phco2g01881 673 Pfam Zinc finger, C3HC4 type (RING finger) 28 75 - -
Phco2g01881 673 Pfam BRCA1 C Terminus (BRCT) domain 449 525 IPR001357 -
Phco2g01881 673 SUPERFAMILY RING/U-box 28 93 - -
Phco2g01881 673 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 261 IPR031099 GO:0006281|GO:0006974
Phco2g01881 673 ProSiteProfiles BRCT domain profile. 559 673 IPR001357 -
Phco2g01881 673 ProSiteProfiles BRCT domain profile. 452 538 IPR001357 -
Phco2g01881 673 FunFam Breast cancer type 1 susceptibility protein homolog 449 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01881 Phco-Chr2 49451444 49456425 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01881 2 49451444 49456425 Phco2g01881 2 49451444 49456425 ECH