Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01768 ATGCTTGCAATAAGAAAGCTGAAAACAGGGCCTGATATCCCTTTGGTTTTAAGTGTCGTGGTTGCTAATTTCAGTTATAGAACAGCCCATGTTTCCAGTGACAAAATTGTCCGGTATACTGTTAAGTCGGTTGCCTCTAGTTTAGCTAAATCAAGTTCATCAACACTTCCACTGGGATCAGAGAATAAATTTACTCTTCAAGGACTATATTTCTCTGGTGTGACTGAAAGAATCTTGGTCCATGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATTCGAATCAATTAGATTATTCATGGAAATTATTGGAGCAGCATATGCACATGGAGGGGTTTCCCAGAAAATCTGTCATCACTAAGCTTGTAACAAGTTATGTGGACAGCCTTGATACGAAATTGCTAGGAAAGGCTTATGAGTTGGTAGAACGTGCTATTGAGAAAGGTAAACAAGATTTGTTGGAAAAGAATGTGCTTATCTACCTCAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGGAAGATGATAGATATGGAGCATTTTCCCTCAGCCACTGCTTGGTCTGCAGTTTTAGCACACATGTCACAAACTGCAGAAGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGATCCGCGTAAAAAGAGCAATGCACCTATGATAGCCATGAAACCAAACAGTGCTGCTTTTAGCATTGCTTTGGCAGGATGCCTCCTATTTGAGTCATCTAGGAAGGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATACGAGAGAAATGGGCGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTGTTGACATGCCATTTGAAATTTGGGGATCTAGATTCTGCTTCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGATGAATGCTGATGGAATTGATCCTAATCGTTCCCCTGGACTGGCTTCTGTGCATAGTTTGAACAACAGTGAAGATTTAGATAGTTTACAAAATAACAGGTCGATTACAAGGGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGAAACTTCTCAAAGCTTGAGGCAGAGTCGAAAGCTATACTTGGTTCTTTATTGTCTAAGTTGCAGATGCGGGTGGACTTGATCACAACCAAACATGGTATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGTTAGAAGCTGGCAAGACCAAGGATTTAGCTGTGTTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTTCATGTTATTAACACGTGCATCTCACTTGGATGGCTGGATCAAGCACACGATCTCCTGGATGAAATGCGTCTAGCCGGGGTTAGAACAGGTTCATCTGTATACTCATCTCTTTTGAAAGCATATTGCCGAGCAAATAGGGTGGCAGATGTCTCATCGCTTCTGAGAGATGCTAGGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGAGTGCTCCAGAAAGACACACAGGGTGCACTCCAACTATTTAAAGAGAGGAAAGAGGCTAGAATTCCAAGAGTTACCCAACAAAACTCTGGCATGATGGCTAAAGATGGGGCTGGGACTGAGGAAGCTGGGCTAATGACCAAGCTGTTGCAGGAAATCAAGGAAGGGCAGGGAGTGGATTGTGGAGTTCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAAACTGATGCAAGATGCAGAGAAGGCTCTAAAAAAGATGAGAAGCTTAGGCCACTTGCCAAATGTGCAAACTTTCCATTCTATGGTCACGGGGTATGCTGCCACTGGAGGAAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAGGCTCTTGCTTCTTCTATCTCCATGACGTTTGATAAGGAACTTCTTGATTCTGTGTTGTATACGTTTGTAAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTGACCATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCGAAATTTCAGACAGAATCCCAACTAAGCAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2355 0.4157 MLAIRKLKTGPDIPLVLSVVVANFSYRTAHVSSDKIVRYTVKSVASSLAKSSSSTLPLGSENKFTLQGLYFSGVTERILVHAQDPAKVSLEIQNAIDSNQLDYSWKLLEQHMHMEGFPRKSVITKLVTSYVDSLDTKLLGKAYELVERAIEKGKQDLLEKNVLIYLSFGLAKARLPVPASTILRKMIDMEHFPSATAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVDPRKKSNAPMIAMKPNSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRHFYNCLLTCHLKFGDLDSASNMVLEMLRKAKEARNSLAAAKFMMNADGIDPNRSPGLASVHSLNNSEDLDSLQNNRSITRAVLSYEEFSKDRNFSKLEAESKAILGSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINTCISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVSSLLRDARIAGIQLDSSSYEAMIQSRVLQKDTQGALQLFKERKEARIPRVTQQNSGMMAKDGAGTEEAGLMTKLLQEIKEGQGVDCGVHDWNNVIHFFCKKKLMQDAEKALKKMRSLGHLPNVQTFHSMVTGYAATGGKYQEVTELWGEMKALASSISMTFDKELLDSVLYTFVRGGFFVRANEVVTMMEKGNMFVDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALAFKRWIGLT 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01768 784 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Phco2g01768 784 NCBIfam pentatricopeptide repeat 525 557 IPR002885 -
Phco2g01768 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Phco2g01768 784 Gene3D Tetratricopeptide repeat domain 599 778 IPR011990 GO:0005515
Phco2g01768 784 Gene3D Tetratricopeptide repeat domain 234 373 IPR011990 GO:0005515
Phco2g01768 784 Pfam PPR repeat 324 350 IPR002885 -
Phco2g01768 784 Pfam PPR repeat 494 519 IPR002885 -
Phco2g01768 784 PANTHER BNAC05G43320D PROTEIN 25 783 - -
Phco2g01768 784 Gene3D Tetratricopeptide repeat domain 430 593 IPR011990 GO:0005515
Phco2g01768 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Phco2g01768 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Phco2g01768 784 Pfam PPR repeat family 631 676 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01768 Phco-Chr2 48172073 48174427 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01768 2 48172073 48174427 Phco2g01768 2 48172073 48174427 ECH