Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01712 ATGGCAAGTGTTGTGTCAGGCTTCTCATTCTCACTGATTCCTTTCAGTCAACACAAATTCGGAGCCAAATGCGTTGGCTTTCACAAACCCTTGATCCAAAGGAAGCACCGCCAAGTTGGATTGCAAAACCACTTTTTCCCCTTTTTCCGAAACCCATCTTCCAAATTGTGTGCCACTTCACGATTGTCCATTGAGGAGATGGAGCAGCAAGTCGAACCCTTTACACGACCGGAAGACCTAAAAGGGGCGTTGGCGTATTTGTTTAGGACGGAAACTGGTGGAGGTTTGGTGAAAGTTTATGTCACAAAGAAAAAATATAGGTATTTTGTTTACATTGAGATTTCTTCGTTGGATGTGAATCATTATGTTGACAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGGTGACTCATCTTGTTTTGTGGATATGGATTCGACTGGTTTGAGTGGGAATGCGGCAAAGCGGATGAATGTTAGTCCTTTGGTGCAAACTTCTGTTTACAAGTTTGGAGTTGAGTTGGAATTTGATGCCAAATATGTTCCTTTGTACTTGTCATTTTTCTTGATGTCATCTTTGGATGCAGGGTTGGAGATTATAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGTTTGCTACCGGGTTACCCGGGTCCTTTGGGGCTCTCTTATTCTCCTGATGGGTCTGTGAATTTCGCTATTTTCTCAAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAAGGGTGTGGAGAAGCCTGCTTTGGAAGTTGATTTGGATCCCTATGTGAATAGGTCAGGTGACATCTGGCATGTCTCGTTTGAGAGTGTCAAGAGTTTTGTGAGCTATGGTTATCGCTGCAGAGGGGGTGTTCATAAGCAGAACAACGGTGATAGTTCTGCTGAGCTTGTTGTTTTGGACCCGTATGCTAAGATTGTTGGTCATTCTTATCCTAGTGGTCTTGGACTAGTGCAGAATCTTGGATGGTTGAGAAAGGAACCTGCTTTTGACTGGGGTGGTGATTTTCACCCAGATTTGTCCATGGAGGAGCTAGTGGTTTATAGGTTGAATGTCAAGCGCTTTACACAGCATAAGTCAAGCCAACTTCCTAGTAGTTCAGCTGGGACTTTTACTGGTTTGGCTGAGAAGGTTCAACATTTTAAAGATCTAGGCGTGAATGCTGTTCTGCTGGAGCCAGTTTTCACATTTGATGAAAAAAAAGGACCATATTTTACTTGCCATTTTTTCTCCCTGATGCAAATTTATGGACCATCTGGTGGTCCTGTGTCTACTATGGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTAGTAGAAGTAGTTTTCTCAAATACTGCTGAGGTTGGTGCTCTACAGGGAATTGATGACTCATCCTACTATCTAGCAAATGGAGTTGGTGATTTGAAGATACAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTGGATAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGACGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGACTTCATGGGGAGTACTCGTCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTCTCCAAGTCTAAAATCATTGCAGATTGTTGGGATCCTCATGACATGGTAGCGAAGGAGATTCACTTTCCTCATTGGATGAGATGGGCTGAAATGAATGCAAAATTTTGTAATGATGTGAGGAACTTTTTAAGGGGTGAAAATCTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGAGACATGTTTTCTGGTGGACGAGGCCCAGCATTCTCTTTTAATTACATTGTCAAGAATTTTGGATTTTCTCTTGTAGACTTGGTCAGCTTCAACAGTGATGATGAATTAAGTTGGAATTGTGGAGAAGAAGGACCCACTAACAACACCAGAGTCCTTGAAAGACGACTCAAACAATTCCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGGCCACTCCTGTGGTGGTTTTCCTGCATATGATGATATAAAGCCTATGACCTGGAGTGCTTTGACAACGGACTTTGGTAAACAAATCTCACAATTCATTTTCTTTATGAGTTCACTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGAAGGAGCTTCTTGAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCAGCACCAAGATGGGAAGACCCATCATGCAAGTTCCTGGCCATGACTTTGAAGAGTGAAGTAGCAGAGTTGTCAGAGAGCTCTGTATCTTCTGATATATCTGGGGATATATTTATTGCTTTAAATGTGGCTGATGAGCCAGAAATTACAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTTGACACAAGTCTTCCATTTCCGGGGTTTTTCTCAAGCAGTGGTGAAATTGTCCCTCAGATGAGAGCAGGTTTGTTTACTTATAAAATGAAGTCTCACAGCTGCGCTTTGTTTGAGGCATGTAATCCTACCATTTAA 2598 0.4253 MASVVSGFSFSLIPFSQHKFGAKCVGFHKPLIQRKHRQVGLQNHFFPFFRNPSSKLCATSRLSIEEMEQQVEPFTRPEDLKGALAYLFRTETGGGLVKVYVTKKKYRYFVYIEISSLDVNHYVDSETLVLCWGVYRGDSSCFVDMDSTGLSGNAAKRMNVSPLVQTSVYKFGVELEFDAKYVPLYLSFFLMSSLDAGLEIISHRRTNFCVPVGLLPGYPGPLGLSYSPDGSVNFAIFSRHAESVVLCLYDEKGVEKPALEVDLDPYVNRSGDIWHVSFESVKSFVSYGYRCRGGVHKQNNGDSSAELVVLDPYAKIVGHSYPSGLGLVQNLGWLRKEPAFDWGGDFHPDLSMEELVVYRLNVKRFTQHKSSQLPSSSAGTFTGLAEKVQHFKDLGVNAVLLEPVFTFDEKKGPYFTCHFFSLMQIYGPSGGPVSTMASMKEMVKTMHANGIEVLVEVVFSNTAEVGALQGIDDSSYYLANGVGDLKIQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGLHGEYSSRPPLVEAIAFDPVLSKSKIIADCWDPHDMVAKEIHFPHWMRWAEMNAKFCNDVRNFLRGENLLSDLATRLCGSGDMFSGGRGPAFSFNYIVKNFGFSLVDLVSFNSDDELSWNCGEEGPTNNTRVLERRLKQFRNFLFILFVSLGVPVLNMGDECGHSCGGFPAYDDIKPMTWSALTTDFGKQISQFIFFMSSLRRRRSDLLQRRSFLKEENIEWYGSDGAAPRWEDPSCKFLAMTLKSEVAELSESSVSSDISGDIFIALNVADEPEITVLPLPPEGMSWYRLVDTSLPFPGFFSSSGEIVPQMRAGLFTYKMKSHSCALFEACNPTI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01712 865 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 221 314 IPR004193 GO:0004553|GO:0005975
Phco2g01712 865 Gene3D Glycosidases 336 746 - -
Phco2g01712 865 PANTHER GLYCOGEN DEBRANCHING ENZYME 181 859 - -
Phco2g01712 865 SUPERFAMILY E set domains 216 348 IPR014756 -
Phco2g01712 865 SUPERFAMILY Glycosyl hydrolase domain 746 860 - -
Phco2g01712 865 SUPERFAMILY (Trans)glycosidases 338 737 IPR017853 -
Phco2g01712 865 Pfam Alpha amylase, catalytic domain 379 465 IPR006047 GO:0005975
Phco2g01712 865 Coils Coil 727 747 - -
Phco2g01712 865 Gene3D Immunoglobulins 207 326 IPR013783 -
Phco2g01712 865 CDD AmyAc_plant_IsoA 351 739 IPR044096 GO:0019156|GO:0019252
Phco2g01712 865 SMART aamy 359 731 IPR006047 GO:0005975
Phco2g01712 865 CDD E_set_GDE_Isoamylase_N 221 359 IPR044505 -
Phco2g01712 865 Gene3D - 747 864 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01712 Phco-Chr2 47402010 47404607 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01712 2 47402010 47404607 Phco2g01712 2 47402010 47404607 ECH