Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01647 ATGGGTTATCCTTACAATTGTGGTCAACCCTCTGTATTGGATCTGGGGTCCTTCTTGTTTGTGATGAAGCTAGGGAAGCGTCTTTCTGGTTTGGTGATTGAAGCTGCCATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAACCTGAAACTGGCCCCATAAGCAATGAAGCTGTGAACTTGGATGATTGGATAGGAGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGCTTAGGGCACGGCAACGGTGGCGATGGCGGCATCTTCCGCTACCGCATCCTGAACTTCATGTTCACATCCCACCTGAAGCTGCGCGGCATTTTCATATACCTCCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTCTGGTCAATTCTGGAAATGGAACTGCCTTGCAGGCTGGAGAAGGCAGTGTGGCGGCGGAGGAGAGAATGGAGGAGGCGCCGAAGGCGTGTGAGAATGTGAATGGTGTTGCAGAGGACGAGGCTTCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGGGATTTGTTTGATTGTAACATCTGTTTGGACCTCTCTAGGGATCCTGTTGTGACTTGTTGTGGGCATTTGTTTTGTTGGCCTTGCCTGTATAGGTGGTTGCATCTGCATTCGGATGCGAAAGAGTGTCCAGTTTGTAAGGGAGAGGTGACTCTCAAAAGTGTTACCCCAATATATGGCCGTGTGAACAATGTCCGAGGTCATGAGGAGGATTCTTCTCTTAAGATCCCTCCCAGGCCCCAAGCAAGGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTCGGGAGTAGAATTGATCTTACACGTGATTTTGTTCAGCCACATGAAGTGGATGGTGCCCGTGAAACTGCCGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCTCGAGGGATGCGGAGAGAGCAGAATTTAGGGCCACTCCCAGAGGATGTAATGGCTTTGGCTCAGAATAATGCTAATACTGCTGAGGCAGGGGATAACAGAAGTAGGGTTCAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACGCTTTCTACTCTTTCGTCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCCTATTTCCGTAGCAATCCAATTGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGATGACAGGGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAATGATGCTTCAAGATTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGACGCAGACGTTTGAACTGA 1437 0.483 MGYPYNCGQPSVLDLGSFLFVMKLGKRLSGLVIEAAMEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRLRARQRWRWRHLPLPHPELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEAPKACENVNGVAEDEASQKKDDVEKGSGTDGDLFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRVNNVRGHEEDSSLKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDFVQPHEVDGARETAERTTSLLSRFLTARGMRREQNLGPLPEDVMALAQNNANTAEAGDNRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPIGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRLSDVDSGDSRAPRRRRLN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01647 478 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Phco2g01647 478 MobiDBLite consensus disorder prediction 170 184 - -
Phco2g01647 478 SUPERFAMILY RING/U-box 188 247 - -
Phco2g01647 478 Pfam Zinc finger, C3HC4 type (RING finger) 192 238 - -
Phco2g01647 478 MobiDBLite consensus disorder prediction 456 478 - -
Phco2g01647 478 FunFam E3 ubiquitin-protein ligase RMA3 161 282 - -
Phco2g01647 478 CDD RING-HC_AtRMA-like 191 234 - -
Phco2g01647 478 SMART ring_2 193 233 IPR001841 -
Phco2g01647 478 MobiDBLite consensus disorder prediction 402 422 - -
Phco2g01647 478 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 159 370 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phco2g01647 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Phco2g01647 478 ProSitePatterns Zinc finger RING-type signature. 208 217 IPR017907 -
Phco2g01647 478 MobiDBLite consensus disorder prediction 163 184 - -
Phco2g01647 478 MobiDBLite consensus disorder prediction 445 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01647 Phco-Chr2 46765867 46767489 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01647 2 46765867 46767489 Phco2g01647 2 46765867 46767489 ECH