Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01621 ATGGAAGATTTGAAGAAGAGAAAACTGGACGAAGCAGGAAACTGTGATTTTACTTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTGGCTAAACCCCAGCTCGTTGATCTTCTAGCTAAACTAGGGTCCCAATATCCTTCAATAGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCCGTGATCTATGATAAAGTAACAGGGAAGTCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCCCCTGATCTTTCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACGAGTGAAATGCTGCTTAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATATGACAGGGATACCAATGAATCACGTGGCTTTGGCTTTGTCACTTACAAGACAGCAGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGGCTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCTAACAAAGGTAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTGCCTTACCTATGAGCACAGGCTATATGCAGCCTGGTAAAAGCTCTGGCCCCCCAATAAATTACAATTACCCCCAAACCGTAGCACCATATTCTGCATCTCCTTATCCAAACCCTCACACAGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACCCAACCTGTAGGAACGAACAACTACCCTTATTACTATCCCAAGCAATGA 1002 0.4401 MEDLKKRKLDEAGNCDFTSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKALGGRNIIVKYADSNKGKTGQPPFPSGVVPMAALPMSTGYMQPGKSSGPPINYNYPQTVAPYSASPYPNPHTVPSPYPTQGQIPYPPVSAKKDQHGFPPTQPVGTNNYPYYYPKQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01621 333 Gene3D - 142 240 IPR012677 -
Phco2g01621 333 MobiDBLite consensus disorder prediction 285 301 - -
Phco2g01621 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Phco2g01621 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 218 IPR000504 GO:0003723
Phco2g01621 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 132 - -
Phco2g01621 333 Gene3D - 55 141 IPR012677 -
Phco2g01621 333 FunFam UBP1-associated protein 2C-like 60 141 - -
Phco2g01621 333 FunFam UBP1-associated protein 2C 142 240 - -
Phco2g01621 333 CDD RRM2_NsCP33_like 156 230 - -
Phco2g01621 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Phco2g01621 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
Phco2g01621 333 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Phco2g01621 333 SUPERFAMILY RNA-binding domain, RBD 149 245 IPR035979 GO:0003676
Phco2g01621 333 MobiDBLite consensus disorder prediction 284 333 - -
Phco2g01621 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Phco2g01621 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01621 Phco-Chr2 46490846 46494428 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01621 2 46490846 46494428 Phco2g01621 2 46490846 46494428 ECH