Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01516 ATGGGAGCTGCGTGGAGGCAGTTGAAGGTCATGCTCCGCAAGAACTGCCTCCTCAAAATTCGTCATCCCTTCGTCACTGCTGCCGAGATTTTGCTCCCTACGATTGTGTTGCTGCTGTTAGTAGCTATAAGGACAAAAGAGGATACACAAATTCATCCTGCTCAACCGCACATTCAAAAAGATATGTTTGTGGAAGTGGGTAAAGGCATATCACCCAACTTTCAACTACTTTTGCAATCGTTGGTGGATAGTGGAGAGTATTTAGCTTTTGTGCCAGATACTGATGAGACGAAGCTGTTGATAGACGTAGTGTCAATAAAATTTCCACTCTTGAAGCATGTTAGTAGAGTATACAAAGAAGAGGTAGAGCTGGAAACCTACATCCGCTCTGATGCTTATGGTATCTGCAATCAAGCAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCCATTGTGTTTTATGAACAAGGCCCTCAATCCTTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCAGATGTTACAACAATAATGGATACGAACGGTCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCCGTACCAACAATGCAATACAGCATCAGTGGGTTTTTGACCCTCCAGCAAATGGTTGATTCATTCGTAATATTAGTAGCGCAGCAGTCTGACTTAAATTTCAATGCTGAAAGTCTGGACCTTCCCCTTCCAGGCTTCAATGACAATATTTTCTTTTTGAAAAATCCATGGACTCAGTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTATACTGATGACCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACTTATTGGGATTTCTCTATCCAATTTCTCGCCTAATCAGTTATTCTGTGTTCGAAAAGGAACAGAAGATTAAAGAAGGACTGTATATGATGGGCCTGAAAGATGGTGTATTTCATCTGTCTTGGTTTATCACATATGCATTGCAGTTTGGAATTTCTTCTGGAATCCTTACAGCTTGCACCATGTATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTTTTTGTTTTTGGGCTAAGTGCAATAATGCTCTCATTCTTTATATCAACATTTTTCAAACGGGCTAAAACAGCTGTAGCTGTTGGAACTCTATCTTTTCTTGGAGCCTTTTTCCCATATTACACAGTAAATGACGAGGGAGTTTCAATAATCTTGAAGGTTTTTGCTTCTTTGCTTTCACCTACTGCCTTTGCTTTGGGTTCAATCAACTTTGCTGATTACGAGCGTGCACATGTTGGACTTCGTTGGAGCAACATATGGAGGGAATCATCTGGAGTGAACTTTCTTGCATGTCTTCTGATGATGATATTTGATACACTGCTATATTGTGCGATTGGACTTTATTTTGACAAGGTTCTTCCAAGGGAGTATGGAAGGAGATACACATGGAGCTTTATTTTCCAAAAGGACTTCTGGAGGAAGAAAAAAGAAGTTAAAATGTCTGGGAAGAATTCCGAGTCAGAAGGGAATATTTCAGGGGAATATACTTCCAGACCTGCTATTGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTACATAAAGTGTATGCTACAGACAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGAAACTGTATGAAAACCAGATTCTTGCCCTCCTAGGACATAATGGAGCTGGGAAAAGCACAACAATCTCAATGCTTGTTGGTCTGCTTCCTCCTACTTCTGGAGATGCTTTGGTATTCGGAAAGAATATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTATTTCCTGAATTAACGGTTAGAGAACATTTAGAACTATTTGCCATATTAAAGGGAGTGGAGGAACACTTGTTGGACAATGCTGTTATTAATATGGCTGATGAGGTGGGCCTTGCTGATAAAATCAACAGTATTGTGAGAACTCTTTCTGGTGGCATGAAGAGGAAATTGTCACTTGGAATTGCATTGATTGGAAACAGTAAGGTTATAATCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCAGATGAACTAGGTGACAGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACCCTTGTGAAGTCAGCTCCCACTGCTTCTATTGCTAGTGATATAGTATACCGTCATGTTCCATCTGCAACATGTGTAAGCGAGGTTGGAACAGAGATTTCTTTCAGGCTTCCAATGACATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAGACCAGTTTCGAACATGGAATTGAGTGGCAATGGTGAAAAAGAAAATCTTGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTATTTTTAAGAGTTGCAGGATGTGATGATGATGAGGCTGAATGCTTTGAAGAAAATAAGCATTCTCTGATATCTAACTCTGTGGCTTCACTTCCTACTAGTGATGATCCTTCCACAAAAATTAGTTCTCTTAAAACTTTTGGAAATTATAAGAGGATTCTGGGTTTCATGGCTACCATGTTGGGAAGAGCTTGTCGCTTAATTTTTTCTACATTTCTTAGTTTGATCAGTTTCTTGGGTATGCAGTGCTGTAGTTGTTGTCTCATTACTAGGTCAACATTTTGGCAACATTTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATTTTCCAGCTAATAATTCCTACTCTCTTCCTGTTTGTTGGTCTTCTATTTCTCAAGCTCAAACCACATCCTGATCAGCAATCACTGACCCTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGCGGGGGCGGGGGAGGTCCAATTCCATTTAATCTATCTTTTCCAATTACTGAAAAGGTAGCACAAAATGTCATGGGAGGTTGGATACAGAAGTTCAAGTCGAGCTCGTACAGATTCCCTAATTCAGAGAAGGCATTGGCTGATGCAGTGGAAGTGGCAGGACCAACTCTGGGACCTGCTCTACTTTCTATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATCGTGATGGATGATCAAAGTAATGATGGAAGCTTAGGATACACTGTATTACACAACTGTTCCTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCTATTCTTAGGCTTGCAACTCAAGACACAAATATGACAATTCGGACACGCAACCACCCTTTGCCAACTACGCAAAGCCAGCGCTTACAACGTCATGACCTAGATGCCTTCTCTGCTGCAGTTATTGTCAACATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAACTAATCAGTGGGGTTTCTATCCTGTCATATTGGGCTTCTACATATATTTGGGATTTTGTGGGCTTCTTGTTTCCGGCCTCTTTTGCCATAGTTCTCTTTTACATCTTTGGTCTGGAACAGTTTGTCGGAGGGGTTTCTTTGTTACCAACAATCCTGATGCTATTGGAATATGGACTTGCAATTGCATCATCAACCTATTGCCTTACATTTTTCTTTTTTGACCACACCATGGCTCAGAACGTGGTTCTGCTGATCCACTTTTTCACCGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATGACATCAACAATGAGTACCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCGTTAGCTCTTTTGCGGCAAGGCATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGGGCTTCCATCTGTTATCTTGCTGTTGAGAGCTTTAGTTATTTTCTGTTGACACTTGCACTTGAAATTTTACCTTCTATCAACTTGACTTCATTCATGGTCAAAAAGTGGTGGGAAAAAATTAATATCTTCCGGCATGATAATCCTTATTTGGAACCTCTGTTGGAACCATCTTCCGAAACTGTTGTTACGGACTTTGATGAAGATGTAGATGTAAAAACAGAAAGAAATAGAGTACTTTCAGGTTCCCTTGACAATTCCATTATCTACCTGCGCAATCTTCGTAAGGTATATTTTGAGGAGAAGCATCATGGAAGAAAGGTTGCAGTAGATTCTTTAACTTTCTCAGTCCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGCTATGCGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCAAAGGCTGCTCGTCAATATATTGGATATTGTCCACAATTTGATGCTCTATTGGAATACTTAACTGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGATTTTGCAATGGAAAATGTTGTTATGGAAAAGTTGGCCGAGTTTGACTTGTTGAAACATGCCAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGAAAACTGTCTGTTGCAATTGCAATGATTGGTGATCCACCTATAGTCATTCTAGATGAACCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACAAGACGAGGAAAGACTGCAGTAATTCTGACTACACACAGCATGAATGAAGCCCAAGCCTTATGTACCAGAATAGGGATAATGGTTGGTGGACAATTACGATGCATAGGAAGTCCACAGCATCTGAAAACAAGATTTGGAAATCATCTGGAACTAGAGGTCAAACCTACTGAAGTGAGTTCTGTGGACTTGCAAACCCTCTGCCAAGCTATTCAAGAAAGACTTCTTGAAGTCCCGTCTCATCCTAGAAGCTTGCTTAATGACCTCGAAATTTGCATTGGGGGCACTGACTCTGTCACATCAGCAGGAAATACCTCCATTGCAGAGATTAGCTTGACACAAGAAATGATAAGCTTAATTGGGCACTGGCTTGGCAATGAAGAACGAGTAAAGACATTAATCTCTTGTACGCCTGTCTGTGATGGAGCTTCTCAGGAACAATTATCAGAACAACTATTTCGAGGTGGCGGCATTCCATTGCCAGTATTTTCTGAGTGGTGGCTGTCTAAACAAAAATTCTCAGAAATTGATTCATTTATTCTCTCTTCATTTCGTGGAGCAAGATGCCAAGGGTGCAATGGTTTGAGCATCAGATATCAGTTACCATATAATGAGGATTTTTCCTTGGCGGATGTTTTTGGACTTCTTGAAAGGAATAGGAATACATTAGGGATTGCGGAGTACAGCATCAGCCAGTCAACTCTAGAGACAATATTTAATCATTTTGCAGCTAATCCATGA 5655 0.3991 MGAAWRQLKVMLRKNCLLKIRHPFVTAAEILLPTIVLLLLVAIRTKEDTQIHPAQPHIQKDMFVEVGKGISPNFQLLLQSLVDSGEYLAFVPDTDETKLLIDVVSIKFPLLKHVSRVYKEEVELETYIRSDAYGICNQARNCSNPKIKGAIVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSISGFLTLQQMVDSFVILVAQQSDLNFNAESLDLPLPGFNDNIFFLKNPWTQFNPAHIRIAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGVFHLSWFITYALQFGISSGILTACTMYNLFKYSDKTLVFAYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSIILKVFASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMIFDTLLYCAIGLYFDKVLPREYGRRYTWSFIFQKDFWRKKKEVKMSGKNSESEGNISGEYTSRPAIEAISLDMKQQELDGRCIQIRNLHKVYATDKGDCCAVNSLQLKLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHLLDNAVINMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPSATCVSEVGTEISFRLPMTSSSAFERMFREIEGCMKRPVSNMELSGNGEKENLGIESYGISVTTLEEVFLRVAGCDDDEAECFEENKHSLISNSVASLPTSDDPSTKISSLKTFGNYKRILGFMATMLGRACRLIFSTFLSLISFLGMQCCSCCLITRSTFWQHFKALFIKRAISARRDHKTIIFQLIIPTLFLFVGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSFPITEKVAQNVMGGWIQKFKSSSYRFPNSEKALADAVEVAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQSNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATQDTNMTIRTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVSILSYWASTYIWDFVGFLFPASFAIVLFYIFGLEQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLMTSTMSTNSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEILPSINLTSFMVKKWWEKINIFRHDNPYLEPLLEPSSETVVTDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQYIGYCPQFDALLEYLTVQEHLELYARIKGVPDFAMENVVMEKLAEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQTLCQAIQERLLEVPSHPRSLLNDLEICIGGTDSVTSAGNTSIAEISLTQEMISLIGHWLGNEERVKTLISCTPVCDGASQEQLSEQLFRGGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARCQGCNGLSIRYQLPYNEDFSLADVFGLLERNRNTLGIAEYSISQSTLETIFNHFAANP 1884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01516 1884 ProSitePatterns ABC transporters family signature. 1592 1606 IPR017871 GO:0005524|GO:0016887
Phco2g01516 1884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 789 IPR027417 -
Phco2g01516 1884 ProSitePatterns ABC transporters family signature. 686 700 IPR017871 GO:0005524|GO:0016887
Phco2g01516 1884 CDD ABC_subfamily_A 551 772 - -
Phco2g01516 1884 Gene3D - 527 787 IPR027417 -
Phco2g01516 1884 Gene3D - 1447 1697 IPR027417 -
Phco2g01516 1884 FunFam ABC transporter A family member 1 1444 1698 - -
Phco2g01516 1884 Pfam ABC transporter 571 714 IPR003439 GO:0005524
Phco2g01516 1884 CDD ABC_subfamily_A 1455 1681 - -
Phco2g01516 1884 FunFam ATP-binding cassette sub-family A member 12 542 788 - -
Phco2g01516 1884 Pfam ABC-2 family transporter protein 192 480 IPR013525 GO:0016020|GO:0140359
Phco2g01516 1884 Pfam ABC-2 family transporter protein 983 1385 IPR013525 GO:0016020|GO:0140359
Phco2g01516 1884 Pfam ABC transporter 1477 1619 IPR003439 GO:0005524
Phco2g01516 1884 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 967 1390 IPR026082 GO:0016020|GO:0055085|GO:0140359
Phco2g01516 1884 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 551 784 IPR003439 GO:0005524
Phco2g01516 1884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1454 1684 IPR027417 -
Phco2g01516 1884 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1455 1693 IPR003439 GO:0005524
Phco2g01516 1884 SMART AAA_5 1485 1671 IPR003593 GO:0016887
Phco2g01516 1884 SMART AAA_5 579 761 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01516 Phco-Chr2 45090473 45152656 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01516 2 45090473 45152656 Phco2g01516 2 45090473 45152656 ECH