Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01500 ATGGAGAGGACTCTCCTCAAGGATTTTGAGCTCCTAGACAAAAATCCCTCCGTCGAAGCTCTCCGCCGATGGAGATCCGCCGTCACTCTCGTCAAAAACCGCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGACAAGCGCGACGAAGCTCTACAGATTAGGCAGGGAATCAAGGAAAAATTTCGAATTGCTCTCTATGTTCAAAAAGCAGCATTGCATTTTATCGATGCTGGTAATCGTGTTGAATACAAGCTATCGAGTGAGGTGAGAGACGCTGGTTTTTGTATTCATCCAGAGGAGATTGCTTCTATTGTTCGGGGCCATGATAAGAAGATCTTAAATAATATTGGTGGAGTTGAGGCCATCGCAAGGAAACTGTCAGTTTCTGTGGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCCGACAACAGATTTATGGATTCAATCGTTATACCGAGAAACCTCCCAGATCGTTTCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTTTGATCATTCTCATTGTTTGTGCTGTAGTTTCTATAGGTGTAGGGATAGCCACTGAAGGGTGGCCAAAGGGAACGTATGATGGTGTGGGCATTGTACTCAGTATATTCTTAGTAGTCACTGTTACAGCTGTCAGTGATTACAAGCAATCCCTGCAGTTCAGGGCTTTGGACAAAGAGAAGAAAAAAATATTTGTTCAGGTCACTAGGGATGGGAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGAGATGTTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCTGATGGAATTTTTATATCAGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTAGATGAAGAAAAACCGTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTATTAACGAGGGGGGAGATGATGAGACCCCGTTGCAGGTTAAATTAAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTGCTGACCATAAGGTTTGTGGTTGAAAAAGTGCATAAGGGTGAGTTTGCCAGCTGGTCTACGGATGATGCAATGAAGTTACTGGACTTCTTTGCTGTTGCTGTGACCATAATAGTTGTTGCGGTTCCTGAAGGATTGCCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGAAAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACACTCACCACTAACCGAATGGTGGTCACTAAAACATGGATATGCGAAAAAGCAATGCAGATAAAAGGTAACGAGAGTGCAGAAGAACTGAAAACATGTACACCTGAAGGAGTTCAAAACATCCTTTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGGAGACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGCTTCCTTTTGGGTGCTGATTTTGATGCCTATGCCCAACGTAGAGAGTACAAAATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCCGTGCTTGTGGGTCTTCCTGATGGACGGGTCCGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAGATATGTGACAAAATTATTGATTGCAATGGGGAAGTTGTTGATCTTCCCGAAGAGCAGGCAAATAATGTCTTTAGTATTATAAATGATTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGACATAAATGAAATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTTTAATAGCATTAGTAGGAATCAAGGATCCCGTACGCCCTGGAGTTAAGGAAGCTGTTCAAACTTGTATAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAGAGAATGCGGTATACTTACTGAGCGTGGTGTAAGCATAGATGGTCCAAAGTTTGGTAACATGTCTTCCGAGGAAATGAAGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGTACAAGTTGGTAAACAATTTGAGGAGTATGTTTGGGGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCAGCACTGCGGGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAATGCTGATGTCATTATCCTGGATGATAACTTCACAACTATTGTCAATGTTGTCAAATGGGGACGTTCAGTATACATAAACATTCAAAAATTCGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCATGCATCACAGGATCTGCTCCACTCACGGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAATGATGGACTTTTGAAAAGACCCCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATACCAATTAATTATCCTTGCGATTTTAAATTTTGACGGGAAGAGGATCCTCAGAATTAGTGGTTCGGATGCAACAGAAGTGCTCAACACTTTGATATTCAACACCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATATTGAAAAAATAAACGTATTCAGAGGCATTTTCGACAGCTGGATATTTCTGTCGATAATTTTCGCCACTGTAGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGGTACTAAGTTTGTTAATCGGAGCAGTTAGCATTCCTATAGCTGCTATCCTCAAGTGCATCCCTGTTGAAAAGGATACTACTAGTAAGCAGCACCGTGATGGTTATGACGCATTGCCATCTGGTCCCGAACTGGCATAA 3114 0.4226 MERTLLKDFELLDKNPSVEALRRWRSAVTLVKNRRRRFRMVANLDKRDEALQIRQGIKEKFRIALYVQKAALHFIDAGNRVEYKLSSEVRDAGFCIHPEEIASIVRGHDKKILNNIGGVEAIARKLSVSVDGGVSEESINSRQQIYGFNRYTEKPPRSFLMFVWDALQDLTLIILIVCAVVSIGVGIATEGWPKGTYDGVGIVLSIFLVVTVTAVSDYKQSLQFRALDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFISGYFLLIDESSLSGESEPVNVDEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETINEGGDDETPLQVKLNGVATIIGKIGLTFAILTFVVLTIRFVVEKVHKGEFASWSTDDAMKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNEKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICEKAMQIKGNESAEELKTCTPEGVQNILLQAIFQNTSAEVVKDKDGKETILGTPTESALLEFGFLLGADFDAYAQRREYKILKVEPFNSVRKKMSVLVGLPDGRVRAFCKGASEIILKICDKIIDCNGEVVDLPEEQANNVFSIINDFASEALRTLCLAFKDINEMHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQTCIAAGITIRMVTGDNIHTAEAIARECGILTERGVSIDGPKFGNMSSEEMKDTIPRIQVMARSLPLDKYKLVNNLRSMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTIVNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGKRILRISGSDATEVLNTLIFNTFVFCQVFNEINSRDIEKINVFRGIFDSWIFLSIIFATVAFQVVIVEFLGTFASTVPLNWQFWVLSLLIGAVSIPIAAILKCIPVEKDTTSKQHRDGYDALPSGPELA 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01500 1037 FunFam Calcium-transporting ATPase 16 76 - -
Phco2g01500 1037 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 662 IPR023299 GO:0000166
Phco2g01500 1037 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Phco2g01500 1037 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Phco2g01500 1037 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Phco2g01500 1037 PANTHER CATION TRANSPORTING ATPASE 87 1014 - -
Phco2g01500 1037 Gene3D - 460 657 IPR023299 GO:0000166
Phco2g01500 1037 Gene3D - 165 1012 - -
Phco2g01500 1037 Gene3D - 447 798 IPR023214 -
Phco2g01500 1037 Gene3D - 16 77 - -
Phco2g01500 1037 SFLD C1.7: P-type atpase like 432 805 - -
Phco2g01500 1037 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Phco2g01500 1037 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Phco2g01500 1037 SUPERFAMILY HAD-like 449 858 IPR036412 -
Phco2g01500 1037 CDD P-type_ATPase_Ca_PMCA-like 139 886 - -
Phco2g01500 1037 Gene3D - 133 333 - -
Phco2g01500 1037 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1014 IPR023298 -
Phco2g01500 1037 Pfam E1-E2 ATPase 235 429 - -
Phco2g01500 1037 NCBIfam HAD-IC family P-type ATPase 723 840 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 NCBIfam HAD-IC family P-type ATPase 391 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 NCBIfam HAD-IC family P-type ATPase 202 372 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 NCBIfam HAD-IC family P-type ATPase 549 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 Pfam Cation transport ATPase (P-type) 504 592 - -
Phco2g01500 1037 SFLD p-type atpase 432 805 IPR044492 -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Phco2g01500 1037 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Phco2g01500 1037 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Phco2g01500 1037 FunFam Calcium-transporting ATPase 770 1016 - -
Phco2g01500 1037 FunFam Calcium-transporting ATPase 211 333 - -
Phco2g01500 1037 Pfam Ca2+-ATPase N terminal autoinhibitory domain 7 49 IPR024750 GO:0005516
Phco2g01500 1037 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco2g01500 1037 FunFam Calcium-transporting ATPase 460 657 - -
Phco2g01500 1037 FunFam Calcium-transporting ATPase 650 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01500 Phco-Chr2 44826315 44837455 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01500 2 44826315 44837455 Phco2g01500 2 44826315 44837455 ECH
Phco2g01500 2 44826315 44837455 Phco6g00310 6 3027392 3036280 PCT