Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01468 ATGAAGCTCATTAGCATCAACCCCAAAAACCTCAAACTCAGCCCCAAACACCTCTTTCGCTCCAAAAAGGAACGATCTTTATCCCGATCCGACCCACCCTCTTTCGGATCCTCCTCCTCCGATGACTCCACCCACAAGCCCGCCGCACCCAGCGCCGCAGGCTCCCTCACTCCCACTAGCGTTCTCCCCGGCGTCTCCGGTGACTGGTCCGACGTTACAGTCGACGTCCGGTGGGACCTCGCCCAGGCTTTCCGCCTAATTGACCGAGACAACGATGGGGTCGTTTCGCGCCAGGACCTAGAGGCGGTCCTCACGCGCCTCGGCGCGTCCGACGTCGCGCTCATGCTCAGCGAGGTCGAAGGAGGCGCCGGCGGCTGCATCACCGTGGAGGCCCTCATGAACCATATCGGGTCGGGTCTGGAGTCCGGGTCGGATCCGGAGGAGCTTAAGGAGGCCTTTGCGGTGTTCGACACGGATCGTGACGGGAGGATCTCGGCGGAGGAGTTGCTCCGGGTGTTCAGAGCGATCGGCGACGAGCGTTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGATAGGAACGGGGACGGATTCGTGTGCTTCGAGGACTTCTCTCGTATGATGGAACTGCATCGGTGA 645 0.6155 MKLISINPKNLKLSPKHLFRSKKERSLSRSDPPSFGSSSSDDSTHKPAAPSAAGSLTPTSVLPGVSGDWSDVTVDVRWDLAQAFRLIDRDNDGVVSRQDLEAVLTRLGASDVALMLSEVEGGAGGCITVEALMNHIGSGLESGSDPEELKEAFAVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELHR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01468 214 Pfam EF-hand domain 80 108 IPR002048 GO:0005509
Phco2g01468 214 SUPERFAMILY EF-hand 71 212 IPR011992 -
Phco2g01468 214 SMART efh_1 148 176 IPR002048 GO:0005509
Phco2g01468 214 SMART efh_1 185 213 IPR002048 GO:0005509
Phco2g01468 214 SMART efh_1 79 107 IPR002048 GO:0005509
Phco2g01468 214 Gene3D - 133 214 - -
Phco2g01468 214 ProSiteProfiles EF-hand calcium-binding domain profile. 181 214 IPR002048 GO:0005509
Phco2g01468 214 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Phco2g01468 214 Pfam EF-hand domain pair 147 210 IPR002048 GO:0005509
Phco2g01468 214 ProSiteProfiles EF-hand calcium-binding domain profile. 79 110 IPR002048 GO:0005509
Phco2g01468 214 MobiDBLite consensus disorder prediction 30 46 - -
Phco2g01468 214 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Phco2g01468 214 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 147 211 - -
Phco2g01468 214 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Phco2g01468 214 Gene3D - 74 132 - -
Phco2g01468 214 CDD EFh 79 174 IPR002048 GO:0005509
Phco2g01468 214 CDD EFh 148 210 IPR002048 GO:0005509
Phco2g01468 214 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Phco2g01468 214 MobiDBLite consensus disorder prediction 15 60 - -
Phco2g01468 214 FunFam Probable calcium-binding protein CML35 133 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01468 Phco-Chr2 44322002 44322646 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01468 2 44322002 44322646 Phco2g01468 2 44322002 44322646 ECH