Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01454 ATGCTTTCTTCTGCGATTTCTCTGAAGCCCTTCCTTCAGTCCCTTGTCATTGATCGTTATGCTCAGAGCTCAACTGCTGCATCCAGGTGGGAGTGTTTGGGGTTTAACAAGTCAACAAATTTCAGTACCAAGAGAGTGTTGTGGACAGAGGGGTTCAAGCTGAGTTGCTTGGTTGATAACAGAGAGATGAATGTGGAATCATCATCATCATCATCTTTTGTGGACGATGCTGCCGTGAGCTTAAGTGGTATCGAAGAGGATTCAGGAGAGCCTAGTATTTCTACAATAGTGATGAACTTCGAGAATAAGTTTGATCCTTTTGGAGCAATTAGCCCCCCGCTTTACCAAACGGCTACTTTTAAGCAGCCTTCTGCAATAGAAAACGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGCGATGCTTTAGAAAGTTTACTGGCAAAACTTGATAAAGCAGATAGAGCCTTGTGCTTCACCAGCGGAATGGCTGCTTTGACTGCTGTTGTTCATCTTGTTGGAACTGGTGAGGAAATTGTTGCTGGAGATGATGTATATGGGGGCTCAGATAGGTTGCTGTCTCAAGTAGTTCCAAGGACTGGAGTTGTGGTGAAACGGGTAAATACAACTGATCTGAATGAGGTTGCATCTGCAATTGGACCCAGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTACAAATTTCTGATATTCGAAAAATAGCAGAGATGGCTCATTCACATGGTGCTCTTGTGTTAGTGGACAATAGTATCATGTCACCTGTATTGTCCCGGCCATTAGAACTTGGAGCAGATATTGTCATGCACTCAGCTACAAAATTTATTGGTGGACATAGTGACATTATGGCTGGTGTGCTTGCTGTGAAGGGTGAAAAGTTGGGAAAGGAATTGTATTTCTTGCAAAATGCAGAGGGTTCAGGCTTAGCCCCATTTGACTGTTGGCTTTGTATGCGAGGAATCAAGACCATGGCCCTGAGAGTCGAAAAGCAACAGGATAATGCACAAAAGATTGCTGAGTTCCTTGCTTCCCATCCTCGAGTGAAGAAAGTGAATTATGCTGGCTTGCCTGATCATCCCGGTCGTGATTTACACTATTCTCAGGCAAAGGGTGCAGGATCTGTGCTTAGCTTCTTGACTGGTTCCCTGGCACTTTCAAGGCATATTGTTGAAACTACCAATTACTTTAGCATAACCGTCAGCTTTGGGAGTGTTAAGTCCCTTATCAGCATGCCATGCTTTATGTCACATGCAAGCATACCTTCTGCAGTTCGTGAGGCCAGGGGTTTAACTGAAGATCTTGTTCGTATATCTGTGGGGATTGAGGATGTGAATGATCTCATTTCTGATCTAGACAATGCACTTAGAACAGGGCCTTTTTAA 1413 0.443 MLSSAISLKPFLQSLVIDRYAQSSTAASRWECLGFNKSTNFSTKRVLWTEGFKLSCLVDNREMNVESSSSSSFVDDAAVSLSGIEEDSGEPSISTIVMNFENKFDPFGAISPPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALTAVVHLVGTGEEIVAGDDVYGGSDRLLSQVVPRTGVVVKRVNTTDLNEVASAIGPRTKLVWLESPTNPRLQISDIRKIAEMAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIGGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCMRGIKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPDHPGRDLHYSQAKGAGSVLSFLTGSLALSRHIVETTNYFSITVSFGSVKSLISMPCFMSHASIPSAVREARGLTEDLVRISVGIEDVNDLISDLDNALRTGPF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01454 470 NCBIfam cystathionine beta-lyase 94 467 IPR006238 GO:0004121|GO:0071266
Phco2g01454 470 SUPERFAMILY PLP-dependent transferases 100 466 IPR015424 -
Phco2g01454 470 CDD CGS_like 108 466 IPR000277 GO:0019346|GO:0030170
Phco2g01454 470 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 93 466 IPR000277 GO:0019346|GO:0030170
Phco2g01454 470 Gene3D - 92 334 IPR015421 GO:0003824
Phco2g01454 470 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 276 290 IPR000277 GO:0019346|GO:0030170
Phco2g01454 470 FunFam Cystathionine gamma-synthase homolog 91 333 - -
Phco2g01454 470 Pfam Cys/Met metabolism PLP-dependent enzyme 95 465 IPR000277 GO:0019346|GO:0030170
Phco2g01454 470 FunFam Cystathionine beta-lyase 334 467 - -
Phco2g01454 470 Gene3D Aspartate Aminotransferase, domain 1 335 468 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01454 Phco-Chr2 44058541 44064850 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01454 2 44058541 44064850 Phco2g01454 2 44058541 44064850 ECH