Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01373 ATGGCCAAAGGCGTAATCTCAGACGAAGAAGACGACGTCGAGCTCGACGAGGAAGAGAGGGAACCCATTGATGGGGAAGAATTGGAAGAGGGTCGCGATGTGGATAACGAAGATGAAGACGAAGAAGAGGAAGGACAAGATGAATACGAAAACGATGGTTTTATTGTGGATGACATTGAGGATGAAGAGGAGCAAGATGAAGAAGAGAGAGCAGACAGTGATGATGAGCGACAAAAGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATAAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCCGGAGGGACACTGAGGAGGAGCCCTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGGGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGGAGAAGAAGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGGCAGAGGAAATTGAAGAAGAAGAAAACAAGGCAGGCTCCAGGAGTCTCTTCCTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTGTCTGAGAAATATATGACAGAGCAGGATGATCAAATTAGGGAGCTTGATATTCCGGAGAGAATGCAGATATCAGATGAAAGTACTGGTGCCCCGCCATTGGATGGAAGTAGTATAGATGAAGAGAGTCAATGGATAGTTAATCAACTTGGAAATGGAGCAATCCCTTGGATTTCCAAGAAGGTCTCAAACTCCCAAAATAATGAAAAGGATGACCTACCGATCAACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAGTTAGATATCCCTTTTATTGCAATGTATCGAAAGGAGGAATGCTTAAGTCTATTAAAAGACCTGGAGCAACCTGAAGCTGGTGACGAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTTCTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTGCTTCAGAAGCGGAAGAGTGCCCTTGAGTCATACTATAGTAAACGGTTTGAAGAAGAGTCCCGTCGCGTGTATGATGAAACGAGACTAAACTTAAATCGTCAATTGTTTGAATCAGTCATGAGATCACTGAAGGAAGCAGAGTCAGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAATACAAGAGGCCGAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTATGTCTAACTGTAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCCGAGGAGATGGCTTCTAACTTCACTTGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCAAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAGCAATAGATTCTTTCCATCAGTTTGCCGGGGTGAAGTGGCTGCGGGAGAAGCCATTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATTCAGAAGGCAGAAGAGGAGAAGCTCATTCAAGTTACTATTAAGTTGCCTGAGGAGTATCTTAATAAGTTGATAGACCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAGTATGGGAAGGCATTATGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTAGGCTCAGATGATGAGGCTGCTCCAAGGGTTATGGCATGCTGTTGGGGCCCTGGAAAGCCACTAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTGTTAGATGTGCTTTACACTGGGTCCCTTACTTTTAGGTCACAAAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGAGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTTATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTGGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTAGAATTTCCTCAGAACAACTTCCTTCACAGCAAGGAATAGTGAGGCGGGCTGTTGCTCTTGGTCGTTATCTCCAGAACCCATTGGCAATGGTTGCAACATTATGCGGACCTAGAAAGGAAATCATGTCATGGAAATTGAACCCTTTAGAGAGTTTTCTCAACCAAGATGATAAATTTGCAATTGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCCGGGCTTGGTCCAAGGAAGGCTGCATCCTTACAGAGATCTTTGGTAAGAGCTGGTGCCATTTTTACACGGAAGGACTTTCTCACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGAACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTAGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAGACCTTCTATGACATAAAAAGAGAATTAATTCAAGGTTTTCAGGACTGGCGAAATCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGTAAAATTGTCCAAGTCACAGTTCGAAGAGTACAGGCTCAAAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTCATGAAGGAAGACTACACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGGTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATTCAAAAAAATAGATATCAAGTCTTCCTTGTTTGTAAGGACAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATATTGACCCCTATTACCATGAAGATCGGAGCTGCTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAACTTGCAAAGAAGCATTTTAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAGTGATGGAGTATATGCCCATAAGGATATAGTCGAAGGTGGGAAGGAGCACAAGGACATTACGAGCTTACTCCGAATTGGGAAGACACTAAAAATTGGTGACGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTATGTAGATCCGTTGGTGGCTCACTTAAAGACAATGCTAAACTATCGCAAATTTCGAAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATCGAGAAAGCTGAGTATCCTATGCGGATTGTCTATAGTTTTGGCATCTGCCACGAGCATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCACACCATGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATCGATCGGCTTGTGGCATATTTTCAAAGACATATTGATGATCCCCAGCACGATTCAGCCCCCTCCATTAGATCAGTTGCTGCTATGGTACCAATGCGTAGCCCTGCAGCTGGTGGCTCGTCTGGGCCATCTGTGGGCAGTGGATGGGGTGGTGGTTCAAACAGTGAGGGTGGTAGAAGAGGTCACTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGTGGTGAGTATAGAAACAATGGGAATCAGGACGAACATCCTAGTGGGGTGCCTCGTCCATACGGTGGTGGACGAGGACGTGGTCGGGGTCGAGGTTCTTATAACAACAGAGGACACAACAACAATGAAAGGCAGGACTCTGGTTATGGGGGCAGCAGGTGGGGTTCTAATAATACAAAGGATTCAGATGATGGTTTAAGCAGTTTTCCGGGGGCCAAAGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGAAGTGGTGGTGGAAGTGGTGGTTGGGGTGGTGGAAATGGTGGTGGAAGTGGTGGTTGGGCTGGTGGAAGTGGTGGTGGGGGAGGTGGAAGTGGTGGAGCTAATAACAATGACAATGGTGTCTGGGGACAAGAGACTGGTGGTGATCAAGGAAGCTCCGGTTGGGGAACTGCCCCCAAGAAAGCAGCAGCTGGTAACGGATGGGGGTCTGGAAATTCTGGCGGTTGGTGA 4989 0.4344 MAKGVISDEEDDVELDEEEREPIDGEELEEGRDVDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEERADSDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQISDESTGAPPLDGSSIDEESQWIVNQLGNGAIPWISKKVSNSQNNEKDDLPINKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPEAGDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALESYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTVVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTAIDSFHQFAGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEIMSWKLNPLESFLNQDDKFAIVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRVHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKISDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAHLKTMLNYRKFRKGTKSEVDELLRIEKAEYPMRIVYSFGICHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGPSVGSGWGGGSNSEGGRRGHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGSYNNRGHNNNERQDSGYGGSRWGSNNTKDSDDGLSSFPGAKVQNSPGREAFPGGWGGGSGGGSGGWGGGNGGGSGGWAGGSGGGGGGSGGANNNDNGVWGQETGGDQGSSGWGTAPKKAAAGNGWGSGNSGGW 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01373 1662 SMART rnase_8s 737 855 IPR006641 GO:0006139
Phco2g01373 1662 Pfam HHH domain 1012 1099 IPR041692 -
Phco2g01373 1662 Gene3D - 1118 1206 IPR012340 -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 1345 1438 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 72 92 - -
Phco2g01373 1662 Gene3D - 295 493 IPR023319 -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 295 482 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 9 71 - -
Phco2g01373 1662 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Phco2g01373 1662 Coils Coil 56 79 - -
Phco2g01373 1662 CDD SH2_Nterm_SPT6_like 1247 1335 IPR035019 -
Phco2g01373 1662 Gene3D - 494 930 IPR023323 -
Phco2g01373 1662 SUPERFAMILY Nucleic acid-binding proteins 1120 1200 IPR012340 -
Phco2g01373 1662 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1555 IPR017072 GO:0032968
Phco2g01373 1662 SMART S1_6 1123 1196 IPR022967 -
Phco2g01373 1662 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Phco2g01373 1662 Gene3D - 262 1000 - -
Phco2g01373 1662 SUPERFAMILY SH2 domain 1250 1336 IPR036860 -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 727 895 - -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 903 1000 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 139 161 - -
Phco2g01373 1662 FunFam Transcription elongation factor Spt6 1004 1098 - -
Phco2g01373 1662 CDD SH2_Cterm_SPT6_like 1346 1432 IPR035018 -
Phco2g01373 1662 Gene3D SH2 domain 1233 1344 IPR036860 -
Phco2g01373 1662 SUPERFAMILY Ribonuclease H-like 737 892 IPR012337 -
Phco2g01373 1662 ProSiteProfiles S1 domain profile. 1125 1196 IPR003029 GO:0003676
Phco2g01373 1662 MobiDBLite consensus disorder prediction 113 227 - -
Phco2g01373 1662 Gene3D SH2 domain 1345 1441 IPR036860 -
Phco2g01373 1662 Pfam SH2 domain 1214 1431 IPR035420 -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1494 1510 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1454 1662 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1616 1639 - -
Phco2g01373 1662 SUPERFAMILY Tex N-terminal region-like 337 716 - -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 1118 1206 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1479 1493 - -
Phco2g01373 1662 PIRSF Spt6 2 1503 IPR017072 GO:0032968
Phco2g01373 1662 Gene3D - 727 1117 IPR037027 GO:0006139
Phco2g01373 1662 FunFam Transcription elongation factor spt6 1233 1344 - -
Phco2g01373 1662 Gene3D - 1006 1098 IPR042066 -
Phco2g01373 1662 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Phco2g01373 1662 Pfam Holliday-junction resolvase-like of SPT6 736 892 IPR028231 -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 163 199 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1531 1571 - -
Phco2g01373 1662 FunFam Transcription elongation factor spt6 485 756 - -
Phco2g01373 1662 MobiDBLite consensus disorder prediction 1 94 - -
Phco2g01373 1662 SUPERFAMILY RuvA domain 2-like 1011 1100 IPR010994 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01373 Phco-Chr2 42620541 42629688 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01373 2 42620541 42629688 Phco2g01373 2 42620541 42629688 ECH