Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g01238 | ATGGACTTCGATCACCATCTAACGGAGCTTTCCGCTTCTTCGCCATGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCACGGAGTTCCGACGCCCGATAGAAGAAATCGCGCGGAGGACTCAGTCGATGCTCAACAGAATCGGTGCGGCGGAGAATATTTGGGGCAGAGGCTCGGCATTTCCCGCTGACGTCGACGACGCGTACGAGTGGCTTGTGAACGCGAACGACGACGTTTTGGAGCTGGTTGATGAGTTGGTGGACGAGTTACGGAGGATTAAGAAGGAGAAGGGAGAGGGATTTGAAAACAAGTTGGAGGCGAAGATGAAGGTGCCGTTTCATATACCTACGATCAAGAAGCCTCAGTATGCATACAATATTGTTGTTGATAATGCAAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGATGGTCAGCGGTTTATTCATCCACTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGAAAATATCGATGATCTTCTGCCAATAAAGCCTCCGTCAATAGAATGCACCCCTTTCAAGCTTGTGGAAGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTGTCTGCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGACACTTTGAAGGTTCGTAATCATGTTGGGCCATACCTGAGGGCAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGATATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGTAATATGTTTGATACTGGCCAGGCTTCTAGAGTGTTAAAGTTGGAGAGATACAGTCTGCAATATCTTTTGCAACACTTCTGTGGGATTACTGCAAACAAGGAATACCAGAATGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTGAGATATGGCAGAGAGGATACACACTATTTGCTCTATATATATGATTTAATGAGGATCAAATTGTTTACATTGTCTAAGGAGTCTGAAGGTTGTGATAATCCTTTAGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGTTATATGAGAAGGACCTGCTGACAGAAAACTCGTACCTTCATTTATATGGGTTGAAAGGGGCTGGTTTTAATGCTCAGCAGCTTGCTGTTGTTTCAGGACTCTGGGAATGGCGTGATGGTCTTGCTCGTGCAGACGATGAAGGGTCTGGCTACGTATTGCCAAATAAAATTATTCTTGAAATTGCCAAGCAGATGCCTGTCATTATAAGCAATTTACGGAGAATAGTAGGATGGTCAAGGCTCCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGTTGCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCAGCAAGTTTGTCAAATGTTGTACCCGTTAAGGATGGAACTGAAGTACCTCAGACGAAGGTTGGATGTGCAGCAACAGGAAGCATCGAAGTTCAAAATGACACCTGTAATGATATCTCAGAGAATTGTTTGTTTTCTGGTGATCTGGAGGAGGAATGTTTTCAGCATCAAGATAAAGATGGACAAGGAAAAGTTATATCGAATTGTCTCCCTTCAAATTTCGCAAGTGCCAGTCCCACTATTCTAGAGAAGACTCAAGATGCTGCAAACGTTATTGCACTCTCTACAGCGAAGGGCAATGGAGAGGTGCTAAAACTGCCTACTGGTGCTGTTAATGCGCCACTGCTGAGCTATTCAATTTCAGAATGGAAGCACGATCCTAATAAAAAGATCAAGGAGGAGATCAAGCTAGAACAGATTAAACCATCGGACAATCTTCCATCCCTTTTTGTTTTGGACAACAGTGAGAAGTCAAAACTAGTTGTAGAAACTCCAAGTGTAGCATCTGAAAAATCAGACCCACAGAAGAAACCTGTTTCAGGTTCAGTTTCTACCTCCACCCTCGTGGGGATTGTAACGGTAATCTCTGATTCAGACTCGGAGGATACGCTGCAGCTAAAGAACTCCAACAACCACCCAGGGGAAAATTCTCTTGTGCCCAGGAAAAGAACATAA | 2166 | 0.4377 | MDFDHHLTELSASSPCIPSGEDFHFYYKFTEFRRPIEEIARRTQSMLNRIGAAENIWGRGSAFPADVDDAYEWLVNANDDVLELVDELVDELRRIKKEKGEGFENKLEAKMKVPFHIPTIKKPQYAYNIVVDNANQPFEHVLLEKSEDGQRFIHPLEKLSVLDFVDKENIDDLLPIKPPSIECTPFKLVEEVKGLKELAAKLSAVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLRAVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQHFCGITANKEYQNADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFTLSKESEGCDNPLVEVYKRSYDVCMQLYEKDLLTENSYLHLYGLKGAGFNAQQLAVVSGLWEWRDGLARADDEGSGYVLPNKIILEIAKQMPVIISNLRRIVGWSRLPYVERSLDVIVNIVRHSMQNAVAFEEAALRLKEEHAASLSNVVPVKDGTEVPQTKVGCAATGSIEVQNDTCNDISENCLFSGDLEEECFQHQDKDGQGKVISNCLPSNFASASPTILEKTQDAANVIALSTAKGNGEVLKLPTGAVNAPLLSYSISEWKHDPNKKIKEEIKLEQIKPSDNLPSLFVLDNSEKSKLVVETPSVASEKSDPQKKPVSGSVSTSTLVGIVTVISDSDSEDTLQLKNSNNHPGENSLVPRKRT | 721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g01238 | 721 | ProSiteProfiles | HRDC domain profile. | 405 | 486 | IPR002121 | GO:0003676 | |
| Phco2g01238 | 721 | MobiDBLite | consensus disorder prediction | 660 | 681 | - | - | |
| Phco2g01238 | 721 | Pfam | 3'-5' exonuclease | 189 | 351 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
| Phco2g01238 | 721 | MobiDBLite | consensus disorder prediction | 696 | 714 | - | - | |
| Phco2g01238 | 721 | MobiDBLite | consensus disorder prediction | 665 | 681 | - | - | |
| Phco2g01238 | 721 | SMART | hrdc7 | 405 | 485 | IPR002121 | GO:0003676 | |
| Phco2g01238 | 721 | Pfam | HRDC domain | 408 | 458 | IPR002121 | GO:0003676 | |
| Phco2g01238 | 721 | MobiDBLite | consensus disorder prediction | 696 | 721 | - | - | |
| Phco2g01238 | 721 | FunFam | Putative exosome component 10 | 392 | 488 | - | - | |
| Phco2g01238 | 721 | SUPERFAMILY | Ribonuclease H-like | 120 | 379 | IPR012337 | - | |
| Phco2g01238 | 721 | FunFam | Protein RRP6-like 2 isoform A | 119 | 390 | - | - | |
| Phco2g01238 | 721 | PANTHER | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED | 5 | 647 | IPR045092 | GO:0000175|GO:0000467 | |
| Phco2g01238 | 721 | SUPERFAMILY | HRDC-like | 388 | 481 | IPR010997 | GO:0000166|GO:0044237 | |
| Phco2g01238 | 721 | Pfam | PMC2NT (NUC016) domain | 12 | 93 | IPR012588 | GO:0000176|GO:0006396 | |
| Phco2g01238 | 721 | Coils | Coil | 78 | 98 | - | - | |
| Phco2g01238 | 721 | Gene3D | HRDC domain | 394 | 487 | IPR044876 | - | |
| Phco2g01238 | 721 | Gene3D | - | 112 | 393 | IPR036397 | GO:0003676 | |
| Phco2g01238 | 721 | SMART | 35exoneu6 | 186 | 355 | IPR002562 | GO:0003676|GO:0006139|GO:0008408 | |
| Phco2g01238 | 721 | CDD | Rrp6p_like_exo | 182 | 374 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g01238 | Phco-Chr2 | 39393112 | 39417853 | Dispersed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g01238 | 2 | 39393112 | 39417853 | Phco2g01238 | 2 | 39393112 | 39417853 | ECH |