Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01231 ATGTATGTAACAATGGCATCTCATATCGTCGGATACCCCCGCATGGGTCCCAAGAGAGAGCTCAAGTTCGCTCTCGAGTCTTTCTGGGATGGCAAGAGCAGCGCCGAAGATTTGCAGAAGGTGGCTGCTGATCTCAGGGCATCCATCTGGAAGCAGATGGCTGATGCTGGGATCAAGTACATCCCCAGCAACACTTTCTCTTACTATGATCAGGTGCTTGATGCCACCGCTACCCTCGGCGCCGTCCCACCAAGGTATGGTTGGACCGGTGGTGAGATTGGTTTTGACACCTACTTCTCAATGGCCAGAGGTAATGCTACCGTGCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATTGTCCCTGAATTGGGACCTGATGTGAACTTCACCTATGCTTCTCACAAGGCTGTTGAGGAATACAAGGAGGCCAAGGCGCTTGGAGTGGATACCATTCCCGTCCTCGTTGGCCCAGTCACATACTTGTTGCTCTCCAAGCCTGCCAAGGGTGTCGAGAAATCCTTTTCTCTCCTCTCTCTCCTTCCCAAAGTTCTTGCTGTCTACAAGGAAGTTATTGCTGACCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAGCCTACCCTTGTCTTGGACCTTGAGTCTCACAAGTTGCAAGCATTTACTGATGCATATGCAGAACTTGCACCTGCTTTGTCTGGTTTGAATGTTCTTATTGAGACCTACTTTGCTGACATCCCAGCTGAGACATACAAGACTCTCACATCTCTGAACGGCGTCACTGCATATGGATTTGATTTAGTCCGTGGAACCAAGACTCTTGATTTGATCAAGGGTGGATTTCCAAGTGGAAAATACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCTAATGACCTTGCTGCTTCTCTCGCTACATTACAGGGTCTTGAGGGCGTCGTGGGCAAAGATAAGCTTGTTGTGTCTACCTCCTCCTCCCTTCTTCACACTGCTGTTGATCTTGTTAATGAGACCAAGTTGGATGATGAGATCAAGTCATGGCTAGCTTTTGCTGCCCAAAAAATTGTTGAAGTTAACGCATTGGCTAAGGCCTTGTCTGGCTACAAGGATGAGGCGTTCTTCTCTGCTAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCTCCAAGAGTGAATAATGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATGCTCAACAAAAGAAGCTTAACCTTCCAATCCTTCCAACCACCACTATTGGATCATTCCCTCAGACAGTAGAACTGAGGAGGGTACGCCGTGAGTTCAAGGCTAAGAAGATCTCCGAGGAAGAATATGTTGCGTCAATCAAGGAGGAAATTCGCAAAGTTGTGAAACTTCAAGAAGAGCTTGATATTGATGTCCTGGTTCATGGAGAGCCAGAGAGGAATGATATGGTTGAGTACTTCGGTGAGCAGTTGTCAGGCTTTGCCTTCACTGTTAATGGGTGGGTGCAGTCCTATGGATCTCGTTGCGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGGCAATGACTGTCTTCTGGTCATCTCTGGCTCAGAGCTTTACCAAACGCCCAATGAAGGGAATGCTTACCGGCCCTGTTACCATTCTCAACTGGTCCTTTGTTAGAAACGATCAACCTAGATCTGAAACCACCTATCAGATTGCTCTGGCTATCAAGGACGAAGTAGAAGACCTTGAAAAGGCTGGCATTACTGTCATCCAAATTGATGAAGCGGCCTTGAGAGAGGGTCTGCCACTGAGGAAATCGGAGCAAGCTGACTACTTGGACTGGGCCGTTCACTCCTTCAGAATCACCAATGTTGGCGTCCAGGATACCACTCAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATCATCCACTCCATCATTAATATGGATGCCGACGTTATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTCTCAGTCTTCCGTGAAGGTGTGAAGTATGGTGCTGGAATTGGCCCTGGTGTGTACGATATCCACTCCCCAAGAATACCACCGACTGAGGAAATTGCTGATAGAATCAACAAGATGCTTGCAGTGCTCGAGAAGAACATCTTGTGGGTCAACCCCGACTGTGGGCTCAAGACCCGTAAGTACACAGAGGTGGAACCAGCCCTCAAAAACATGGTTGCCGCAGCAAAACAAATCCGCAACGAACTTGCCAAGTGA 2304 0.4844 MYVTMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRASIWKQMADAGIKYIPSNTFSYYDQVLDATATLGAVPPRYGWTGGEIGFDTYFSMARGNATVPAMEMTKWFDTNYHFIVPELGPDVNFTYASHKAVEEYKEAKALGVDTIPVLVGPVTYLLLSKPAKGVEKSFSLLSLLPKVLAVYKEVIADLKAAGASWIQFDEPTLVLDLESHKLQAFTDAYAELAPALSGLNVLIETYFADIPAETYKTLTSLNGVTAYGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLAASLATLQGLEGVVGKDKLVVSTSSSLLHTAVDLVNETKLDDEIKSWLAFAAQKIVEVNALAKALSGYKDEAFFSANAAAQASRKSSPRVNNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKAKKISEEEYVASIKEEIRKVVKLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSLAQSFTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQADYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLEKNILWVNPDCGLKTRKYTEVEPALKNMVAAAKQIRNELAK 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01231 767 CDD CIMS_N_terminal_like 7 371 - -
Phco2g01231 767 Gene3D - 9 529 IPR038071 -
Phco2g01231 767 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 399 762 - -
Phco2g01231 767 Pfam Cobalamin-independent synthase, N-terminal domain 7 319 IPR013215 GO:0003871|GO:0008270|GO:0008652
Phco2g01231 767 NCBIfam 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 10 764 IPR006276 GO:0003871|GO:0008270|GO:0009086
Phco2g01231 767 SUPERFAMILY UROD/MetE-like 401 763 IPR038071 -
Phco2g01231 767 CDD CIMS_C_terminal_like 437 759 IPR002629 GO:0003871|GO:0008270|GO:0009086
Phco2g01231 767 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 5 766 - -
Phco2g01231 767 PIRSF Met_synth_MetE 4 767 IPR006276 GO:0003871|GO:0008270|GO:0009086
Phco2g01231 767 FunFam 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 9 398 - -
Phco2g01231 767 SUPERFAMILY UROD/MetE-like 7 399 IPR038071 -
Phco2g01231 767 Pfam Cobalamin-independent synthase, Catalytic domain 436 759 IPR002629 GO:0003871|GO:0008270|GO:0009086
Phco2g01231 767 Gene3D - 394 762 IPR038071 -
Phco2g01231 767 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 5 764 IPR006276 GO:0003871|GO:0008270|GO:0009086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01231 Phco-Chr2 39185295 39189630 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01231 2 39185295 39189630 Phco2g01231 2 39185295 39189630 ECH