Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01206 ATGGAAGTAGCCCTTCCCCTTCAAGTACAAAAGCAGAATTTGCATATAACAGGCCGCAAAGTTTTATGTGTCGGATCCCAGAAGGATTTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGATGTAGAGTTGGCCTTGGCATCATTGAAGAAGAGTGGGGGAAATATTAATCAGAGGAACACCTTTGGGTTGACTCCTCTTCATATTGCAAGTTGGAGAAACCATATTCCCATTGTAAGGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGAGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGCAGCAAGCATCCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCTGTAGATCTCTTATCTGGCTCTGTATTTCAGGCTCTTGGAAATGAACAAAGTTCAGTGGCAACTGAGGTCTTTAGCTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTTGGTGGTTCATTCATAAAGCTCATTTCTGCAGGGAAGTTCCATAGTGTGGCGCTCACTGCTCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAAGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTGCTACTCAGGGTGGGGAAGTGTTCAGTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAATAAACACACGGCTGTAGTTTCTGATTTAGGTGAAGTATTTACTTGGGGTTGTAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGGCCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGAGTAGTAGTTAGTAGGAACTTGAAGAAAAGTGGAAGCACTCCTTTAAAATTTCACCGCAAAGAACGGCTTAATGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCCCTTACAGATGATGGCGCATTATTTTATTGGGTCTCCTCTGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGAAATATGGTTAACATATCAGCTGGAAAGTACTGGACTGCAGCCGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGCTTCAGTTGGTGAAACACATTTACTAATAGTGGCTTCACTCTATCAACCTGTCTACCCTCCCAACATGATTGAGAATTCTCAGACCACGTTGAATAGCAGGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAGGATATAGATTCCAGTAAGATGATATCTAGTGTACAAAATGACACTAGCAGGCAGAGGTCTACCCCCAGCTTAAAAAGCCTCTGTGAAAAAGTAGCTGCAGAGTGTTTAGTGGAGCCACGGAATGCAGTACAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGCGAGGAGATTGTCATGCGCAACCTTGATTACATATTTACAGTTTCATCACATACTATAGCAAGTGCATCACCAGATGTTCTGGCTAACCTTGAGAGGTTGCTAGACCAGAGGTCATCTGAGCCATGGAGTCACCGTCGGCTTCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGTGACAAGCCCTTGAAAATGGAAAAAGTCCAAAGAGTAGATTCCTTTCTACAGCCCCAGGACGATTCTGATAAAGAAATCTCAAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTCGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGCACTTGAAAGCTCACTTGCTGAGCTAGGTGTTCCTGTTGAGACGTCACAAAATAAAGAATCATCTTCTATGTTACCAGAAGGAAAGGGCAGTAAGAAGGGTAAACTATCAAAGAAACAAAGGAGAAAGAGTGGCAAATCAAACATAGGGCAGATAGAAATAGAATCTGTTTACTCTAAAAGTGAAGCCATTCCCAACTTGGAGGACCTGTTGGACATTGGCATCATGGGGGTTTCTGATTCAAAGGTGGAAGAGGATGCTGTATGTGAAGAAATCACAGTAGACCAGGGTGCAAAAGATTTAGCTTTTGTAGTGCAGAAGAATGATGCTTTAGAGTTGCTGAAAGCCAAGGGTCCGTCACCAAAAGCTTCAAAGAAGAAGAGCAAGAAGGGTGGTCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCGAAAGAGGTAACTCCTCCTCCACCACCAGCACCAAAAAATGAGGGTCCTGCATGGGGTGGGGCCAAGTTCATGAAGGGTTCTGCTTCTCTTCGCGAAATCCAGGATGAACAAGGCAAAATAAAAATAAACAAGCCAGCTGGGAGCAAAGATAAGGTGGAAGATCTTTCTGATTTTGGCAGTGGGGTTAAAATAAAGTTGAGTTCATTTCTTCTTTCCAGCCCAATACCTGTTACCACAACTCGTAGTTCCCAGGTATCTGATGGAGAAATAAGTACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCATCCTTCTCGGCCATCCTTAAGGGACATCCAAATGCAACAGGGAAAGAAACAACAAAGCCTTTCACACAGTCCAAAGACTAGAACAGCCGGATTTTCCATTGCTACCGGTCAAGGCGGCTCGCCGTCGGAAACAACTGGAGTTAGTCGCTGGTTCAAGCCTGAGGTGGAAACACCATCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATTAAAGATCTCAAGCGCTTCTACAGCAGTGTCAAGATTGTCAGGAAGCAATCTTGA 3237 0.4445 MEVALPLQVQKQNLHITGRKVLCVGSQKDLWLVVREGSLNDVELALASLKKSGGNINQRNTFGLTPLHIASWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQALGNEQSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFSWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLARVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVNISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSASVGETHLLIVASLYQPVYPPNMIENSQTTLNSRDDMEELNEDILFEDIDSSKMISSVQNDTSRQRSTPSLKSLCEKVAAECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHTIASASPDVLANLERLLDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTRDKPLKMEKVQRVDSFLQPQDDSDKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQSKSALESSLAELGVPVETSQNKESSSMLPEGKGSKKGKLSKKQRRKSGKSNIGQIEIESVYSKSEAIPNLEDLLDIGIMGVSDSKVEEDAVCEEITVDQGAKDLAFVVQKNDALELLKAKGPSPKASKKKSKKGGLSMFLSGALDEAPKEVTPPPPPAPKNEGPAWGGAKFMKGSASLREIQDEQGKIKINKPAGSKDKVEDLSDFGSGVKIKLSSFLLSSPIPVTTTRSSQVSDGEISTPPWAASGTPPHPSRPSLRDIQMQQGKKQQSLSHSPKTRTAGFSIATGQGGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAIKDLKRFYSSVKIVRKQS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01206 1078 Pfam Ankyrin repeats (3 copies) 37 127 IPR002110 GO:0005515
Phco2g01206 1078 SUPERFAMILY RCC1/BLIP-II 154 474 IPR009091 -
Phco2g01206 1078 Gene3D - 142 390 IPR009091 -
Phco2g01206 1078 Gene3D - 391 510 IPR009091 -
Phco2g01206 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Phco2g01206 1078 SMART ANK_2a 62 91 IPR002110 GO:0005515
Phco2g01206 1078 SMART ANK_2a 96 125 IPR002110 GO:0005515
Phco2g01206 1078 Gene3D - 10 141 IPR036770 -
Phco2g01206 1078 MobiDBLite consensus disorder prediction 752 789 - -
Phco2g01206 1078 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Phco2g01206 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Phco2g01206 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Phco2g01206 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Phco2g01206 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Phco2g01206 1078 SUPERFAMILY Ankyrin repeat 35 136 IPR036770 -
Phco2g01206 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Phco2g01206 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Phco2g01206 1078 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Phco2g01206 1078 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Phco2g01206 1078 MobiDBLite consensus disorder prediction 962 980 - -
Phco2g01206 1078 MobiDBLite consensus disorder prediction 858 909 - -
Phco2g01206 1078 MobiDBLite consensus disorder prediction 962 1042 - -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Phco2g01206 1078 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Phco2g01206 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Phco2g01206 1078 PANTHER BTK-BINDING PROTEIN-RELATED 26 1069 - -
Phco2g01206 1078 MobiDBLite consensus disorder prediction 752 767 - -
Phco2g01206 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Phco2g01206 1078 MobiDBLite consensus disorder prediction 996 1037 - -
Phco2g01206 1078 Coils Coil 703 723 - -
Phco2g01206 1078 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Phco2g01206 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01206 Phco-Chr2 38347452 38355100 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01206 2 38347452 38355100 Phco2g01206 2 38347452 38355100 ECH