Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01089 ATGGCTTCTTCTTCATCTCTCCTCCCAAGGCCACAACTTCGCACACCCCTCATTTCCAATCTCAACTCTTTCCCAAGAGCATGGAGTCTCTTCATCCTCACACACCCTACACACCCCAAACACGGAAACAAGCAAAAGCTGTCACCTTTCGCTATCAGTGCAGTGTACACCCCACGTAGCACCTACACGCCTTCCAAACCCTCAAAAACTGAACCCCGCAACGACCCCATCTCCGTCCTCAACGAGAGGATTCGCCGCGAGTACAGCAAGAAAGAGGTTTTCAGAACGGTGATGAACTCAGAGGAAGCGGGGAAGTACATGCGGATGGTGAAGGAGCAGCAGCAGAAGGGGTTACAGAAGTTGAAGGGAGATAGGGAGAAGAAAGATGGGGTCTTCAGCTACAGGGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGGATTGGGAGGTTTGTTGGGATGCGGTTTGATTCTGGTAAGAATTCTTCACAAGCGACTGAGTATGTTTTCATCGAGTATGCTGATGGCATGGCGAAACTACCTGTCAACCAGGCTTCCAAAATGCTCTATAGATATAGTCTGCCCAGTGAAACCAAGAAGCCAAGGACATTGAGCAAGTTGAGTGATACTGCCGCGTGGGAGAGAAGAAAGGTTAAGGGTAAGGTCGCAATACAGAAGATGGTTGTGGACCTGATGGAACTCTATCTACAAAGGCTAAAGCAAAGAAGGCCTGCATATCTGAAGACTCCTGCCTTGGCCGAATTTGAAGCTCAGTTCCCTTATGAACCCACACCAGATCAGAAACAGGCATTTATTGATGTTGAGAGGGATTTGACGGAGCAAGAAACACCAATGGATAGATTAATCTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCAATACGTGCTATCTTTTGTGTTGTCTCAGCTAAAAAACAAGCGATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATACCCTGATATCAAGGTTGGGCTGTTAAGCAGGTTCCAGACCAAAGCTGAGAAAGAAGAGAATTTGGACATGATTAAGAATGGTAGCCTGGATATTATAGTTGGAACTCATTCACTCCTAGGAGATCGTGTTACATATAACAATCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCCAGTTTAATATCAACACCACCTCCAGAAAGAGTTCCTATAAAGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAGTGTCAGCCATCAAGTATGAGCTTGATCGTGGTGGTCAACTTTTTTATGTTCTGCCACGTATTAAAGGACTGGATGAAGTAATGACATTTCTTGCAGAGTCATTTCCGAATGTGGAAATAGCCATTGCCCATGGGAAGTTGTTCTCAAAGCAATTAGAGGATACAATGGAAAAGTTTGCCCTAGGAGAAATAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATTATCATTCAGGACGTTCAGCAATTTGGCCTTGCACAATTATACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCACATGCATACTTATTTTATCCTGACAAAGGCCTGCTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGTCGTGAACTTGGTCAAGGTTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAGCAACAATCAGGAGATGTTGGAAATGTTGGTGTTGATCTGTTTTTTGAGATGCTCTTCGAGAGCTTGTCCAAGGTTGAAGATCACTGTGTTGTTTCAGTTCCTTATCACTCGGTACAGGTTGACATGAACATAAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAGAATCCTATGAAAATTTTAAGTGATGCTGAGAGAGTTGCCGAGAAAGACATGTGGAGTTTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCTCCATGGAGATTTTACTAAAGAAGCTTTACATGAGGAGAATGGCGGCTGATTTAGGGATAAGCAGAATTTACTCTTTAGGGAAGATGATCTTCATGAAAACAAACATGAGTAAAAAGGTATTCAAGCTGATGACAGAGTCCATGGCATCAGATTTACATAGAAAGTCATTGGTTCTTGAGGGGGACCAAATTAAGGCTGAACTTCTTTTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTCAATGCCTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2469 0.4313 MASSSSLLPRPQLRTPLISNLNSFPRAWSLFILTHPTHPKHGNKQKLSPFAISAVYTPRSTYTPSKPSKTEPRNDPISVLNERIRREYSKKEVFRTVMNSEEAGKYMRMVKEQQQKGLQKLKGDREKKDGVFSYRVDPYTLRSGDYVVHKKVGIGRFVGMRFDSGKNSSQATEYVFIEYADGMAKLPVNQASKMLYRYSLPSETKKPRTLSKLSDTAAWERRKVKGKVAIQKMVVDLMELYLQRLKQRRPAYLKTPALAEFEAQFPYEPTPDQKQAFIDVERDLTEQETPMDRLICGDVGFGKTEVAIRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDMIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSFSEDKVVSAIKYELDRGGQLFYVLPRIKGLDEVMTFLAESFPNVEIAIAHGKLFSKQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGVDLFFEMLFESLSKVEDHCVVSVPYHSVQVDMNINPHLPSDYINYLENPMKILSDAERVAEKDMWSLMQFTENLRRQYGKEPRSMEILLKKLYMRRMAADLGISRIYSLGKMIFMKTNMSKKVFKLMTESMASDLHRKSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01089 822 SUPERFAMILY CarD-like 135 203 IPR036101 -
Phco2g01089 822 SMART CarD_TRCF_2 140 242 IPR003711 -
Phco2g01089 822 CDD DEXHc_TRCF 255 448 - -
Phco2g01089 822 Gene3D - 144 206 - -
Phco2g01089 822 Gene3D - 207 448 IPR027417 -
Phco2g01089 822 Gene3D - 668 815 IPR037235 -
Phco2g01089 822 SUPERFAMILY TRCF domain-like 665 812 IPR037235 -
Phco2g01089 822 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 681 783 - -
Phco2g01089 822 Pfam Helicase conserved C-terminal domain 472 576 IPR001650 -
Phco2g01089 822 SMART ultradead3 265 457 IPR014001 -
Phco2g01089 822 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Phco2g01089 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 590 IPR027417 -
Phco2g01089 822 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
Phco2g01089 822 SMART helicmild6 493 577 IPR001650 -
Phco2g01089 822 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
Phco2g01089 822 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 621 IPR001650 -
Phco2g01089 822 Gene3D - 141 655 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01089 Phco-Chr2 18709404 18741829 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01089 2 18709404 18741829 Phco2g01089 2 18709404 18741829 ECH