Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01088 ATGAGTTTTCAAGACATCCAAGGTGGGCCCCACCCTCCCTCATGCCGGAGCCAGTCACCGGCGCAGGCCGTCGCGGCCGGAATTTTCCAGATCAACACCGCCGTCGCCACTTTCCGGCGACTCGTCGATGCCGTCGGAACCGTTAAAGACACTTCCGAACACCGTCAGAAACTGCACAATACGAGGCAGAGGATATTGCAACAGGTGAAGGATACTTCTGCTAAGCTAAAATCCTTGAGTGAATCTGATCATGATGCTAATTCTAATGCTAGTCAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTCAAACGACATTGCAAGAGTTTCAGAAAGTACAGCAGCTTGCCTCTGAGCGTGAATCCTGCCTCCCCCTCTTCTACTTTACCAAAAAGGTCAATGAATCCACTTCTCTCTTTCATTTTTGTGTAAACAGCTCTGGCTCTGGTGAAGAATCGATTGGAATAGATGTTGAAAGTCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTAGATAATGAAATATCATTCAACGAAGCCATGATTGATGAAAGAGAACAGGGAATTAGAGAGGTGGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATTGATGATATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAACTAGCCAAGGCTTCCAAAAGTGTGAAATCCAGAACCTCATGGTGTGCAAGTGCATATAATTGGGATAGATTTTGTCCCATATTTGGTGTGTTTTGTGGTGTGAAGAGTGTTTTGACCAAAAGAAATGTGTTAGAAAGTAGCAATGCAGTTTGA 876 0.4349 MSFQDIQGGPHPPSCRSQSPAQAVAAGIFQINTAVATFRRLVDAVGTVKDTSEHRQKLHNTRQRILQQVKDTSAKLKSLSESDHDANSNASQKIEDAKLARDFQTTLQEFQKVQQLASERESCLPLFYFTKKVNESTSLFHFCVNSSGSGEESIGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKSRTSWCASAYNWDRFCPIFGVFCGVKSVLTKRNVLESSNAV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01088 291 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 245 IPR000727 -
Phco2g01088 291 PANTHER SYNTAXIN 21 257 IPR045242 -
Phco2g01088 291 Gene3D - 177 275 - -
Phco2g01088 291 CDD SNARE_Qa 186 244 - -
Phco2g01088 291 SMART tSNARE_6 178 245 IPR000727 -
Phco2g01088 291 SMART SynN_4 8 122 IPR006011 GO:0016020
Phco2g01088 291 Pfam Syntaxin-like protein 25 122 IPR006011 GO:0016020
Phco2g01088 291 Gene3D - 14 125 - -
Phco2g01088 291 FunFam Syntaxin-22 like 15 127 - -
Phco2g01088 291 SUPERFAMILY t-snare proteins 19 238 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01088 Phco-Chr2 18450243 18452616 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01088 2 18450243 18452616 Phco2g01088 2 18450243 18452616 ECH