Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00949 ATGCTTATATCCGGAAGGTGCCAATGCGTTTTGGCGAGTGATTGCGTTGTGATCCGATCAGAACAGAGGAAGGAAAGAAGGAAGGTAACAATGGCGAGTAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCCGCATCTCAACTGTGGAACCAAGTTCAGGAACGAATCTCCAAACATTCCTTCGACACTCCTCTCTACAGATTCAATATCCCTAACCTCCGCGTCGGAACCCTAGATTCTCTCCTCTCTCTCAGCGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCAGAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGGCGTGGACAGCGGCGGCCTCACCGTCGACGGCGTTCCCGTGGATTCCTACTTGACCAGGTTTGTTTGGGATGAGGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATTGTGGATGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATTCGTAGTCAGCTTAATGCTATCAACAGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTATAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTTTCAAGCTATGAGACATTGACAGATTATGTGGTCCCGAGGTCTTCTAAGAAGTTGTACGAGGACAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGAGTCGTAGAAAATTATAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGCGACTTTGAATACAGTCAAGAAACACATGAGAACCGAAAACAAGAGTTAGATAAATTGGTACAAGATCAGGAAAGATTGAGGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTCTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGCGCTATCCTTGAAGCGTTGAGTGATAGTACAAACAGTGCATACTGGAAGATTGAGGATGAAGTAGGTACTGGGATGGCTGGCCTTGCAGGTGATTCCGATGCCCACCCTTATGTTTCTTTCACTATCAATCTTGCTTGA 1221 0.457 MLISGRCQCVLASDCVVIRSEQRKERRKVTMASRYWAVSLPVHNSASQLWNQVQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTQKIRRQIEELERVSGVDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVSKYSQKDWLSSYETLTDYVVPRSSKKLYEDNEYALYTVTLFSRVVENYRTSAREKGFQIRDFEYSQETHENRKQELDKLVQDQERLRASLLQWCFTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRAILEALSDSTNSAYWKIEDEVGTGMAGLAGDSDAHPYVSFTINLA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00949 406 Coils Coil 284 304 - -
Phco2g00949 406 Gene3D - 193 281 - -
Phco2g00949 406 FunFam V-type proton ATPase subunit C 193 281 - -
Phco2g00949 406 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 32 405 IPR004907 GO:0033180|GO:0046961|GO:1902600
Phco2g00949 406 SUPERFAMILY Vacuolar ATP synthase subunit C 30 405 IPR036132 GO:0015078|GO:0033180|GO:1902600
Phco2g00949 406 CDD V-ATPase_C 35 403 IPR004907 GO:0033180|GO:0046961|GO:1902600
Phco2g00949 406 Pfam V-ATPase subunit C 35 399 IPR004907 GO:0033180|GO:0046961|GO:1902600
Phco2g00949 406 Gene3D - 71 342 - -
Phco2g00949 406 Gene3D Vacuolar atp synthase subunit c; domain 1 38 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00949 Phco-Chr2 11963183 11972615 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00949 2 11963183 11972615 Phco2g00949 2 11963183 11972615 ECH