Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00921 ATGTTGAGGGTTGCAGCAAAGAGGCTTTCGTCTCTCTCCTCCTCTCCATGGAGGGCCAATCACGCCGCCTCCGCGGTTCTCTCTCAGAGCCCCGTCGCGCCGTCCCTTTCCTCAGAAGAACGCAGATCCGACTCGTTTTCGCTCCGACCCGAATTCTTTCTTCCCTTCAGAGGTTTTGCTACTGAATCTCTGATCCACTCTAAAGAAAACAGCCTTATTCCTGAAATTCCTGCAACTGTTGCAGCTGTTAAAAACCCTTCTTCTAAGATTATTTATGATGAACACAACCATGAGCGATTTCCTCCTGGTGATCCAAGCAAAAGGGCATTTGCCTACTTTGTCCTAACTGGTGGTAGGTTTGCTTATGCCTCCTTGGTTCGTCTCCTTGTCCTCAAGTTTGTGCTCAGCATGTCAGCAAGTAAGGATGTTCTTGCCCTGGCTTCACTTGAAGTTGATCTCTCCAGCATTGAGGCAGGCTCTACTGTAACTGTTAAGTGGCGTGGAAAACCAGTATTCATCAGGCGCAGAACAGAAGAAGATATTAAGCTGGCAAACAGTGTTGATGTTGCATCTCTTCGTGATCCCCAGGAGGACGCAGACAGAGTAAAAAATCCTGAGTGGCTTATTGTGGTTGGGGTGTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCGGGTGACTTTGGTGGATGGTTTTGTCCGTGCCATGGTTCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCGGCACCATACAATCTAGAGGTACCAACTTATACCTTCTTGGAGGAAAACAAGTTGATGATTGGTTGA 816 0.4767 MLRVAAKRLSSLSSSPWRANHAASAVLSQSPVAPSLSSEERRSDSFSLRPEFFLPFRGFATESLIHSKENSLIPEIPATVAAVKNPSSKIIYDEHNHERFPPGDPSKRAFAYFVLTGGRFAYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEAGSTVTVKWRGKPVFIRRRTEEDIKLANSVDVASLRDPQEDADRVKNPEWLIVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00921 271 SUPERFAMILY ISP domain 145 265 IPR036922 GO:0051537
Phco2g00921 271 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 78 271 IPR014349 GO:0051537
Phco2g00921 271 Pfam Ubiquinol cytochrome reductase transmembrane region 101 142 IPR004192 GO:0008121
Phco2g00921 271 SUPERFAMILY ISP transmembrane anchor 88 144 - -
Phco2g00921 271 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 141 271 - -
Phco2g00921 271 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 125 271 IPR006317 GO:0008121
Phco2g00921 271 PRINTS Rieske 2Fe-2S subunit signature 243 255 IPR005805 GO:0016020|GO:0051537
Phco2g00921 271 PRINTS Rieske 2Fe-2S subunit signature 209 220 IPR005805 GO:0016020|GO:0051537
Phco2g00921 271 PRINTS Rieske 2Fe-2S subunit signature 231 243 IPR005805 GO:0016020|GO:0051537
Phco2g00921 271 CDD Rieske_cytochrome_bc1 148 271 - -
Phco2g00921 271 Pfam Rieske [2Fe-2S] domain 155 257 IPR017941 GO:0051537
Phco2g00921 271 Gene3D - 140 271 IPR036922 GO:0051537
Phco2g00921 271 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 181 269 IPR017941 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00921 Phco-Chr2 11476495 11478847 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00921 2 11476495 11478847 Phco2g00921 2 11476495 11478847 ECH
Phco2g00921 2 11476495 11478847 Phco5g01283 5 47561616 47563468 PCT