Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00818 ATGTCAAAGTCTCCCTCTCATGAACAGCGACAGTCCATTTATTCTGCCTCTCTTCCTGGGGAATTTAATGAGGCAATGGGAATGGATGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGAAACTGCATGCCAACTTGTCATCACCAGTTGAGAAAGAAACTATTACAGCATGCTTACTAGGCATTGCCAGGAGAAAAAAGGATGCTAGAACACTCATCGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTCTTGCAAAAGTAAATGTTGCTTCAACTCTAAGTGTCCTGTGCAAAGATGAAGACCTGAGGTTAAAAGTACTACTTGGAGGTTGTATTCCACCATTATTGTCACTTTTAAACTATGAATCCACCGAGACCAGGAAGGCAGCAGCTGAAGCAATATACGAAGTTTCCTCAGGTGGTCTTTCTGATGATCATGTTGGTATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACTTTATGGAGTCAACTAAATCCGAAGAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATAGTAGGGCTCTTGTCTTCTGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCTTTACTGCAGCTTGTTGGTCCAAAAAATGACATTTCTGTAAGGGCTAGTGCTGCTGATGCCCTAGAGGCCCTCTCTTCAAAATCTACTATGGCTAAAAAGGCCATTGTTAATGCAGATGGAATTCCAATCCTTATAGGAGCAATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTACAAGAGCACTCAACTCGAGCTTTAGCCAATATCTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCACGTGCCCCTCGCCTTGATGCACCAGTTGGGGATATAATTGGGGCTCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTTGATGTTGATGAGAAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGGGACAACAAACTGATTCAAGAGCGTGTCCTTGAGGCTATGGCTAGCCTTTATGGAAACATTTGTCTCTCAAAGTGGCTCATTCAGGCAGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGATGTGCAAGAGTATCTGATACTTTCATTGACAACCTTGTGTTGTGATAAGATTGGACTATGGGAGGCCATAAAAAAGAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGCTGCTAGCAATCCTAACTGATCAGGTCGATGATAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCTCCACTAGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAGGCAGCAAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATACCGGCATTTTTATGGCTTCTTAGGAGTGGTGGACCAAAAGGGCAGGAAGCTTCTGCTATGGCACTCACAAAGCTTGTTCGAATAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTGGGGGATTCTCCAAGCTCGAAAGCCCACATAATCAGAGTTTTAGGTCATGTTCTTACTATGGCCTCACAGAATGATCTCCTTGAAAAAGGTTCTGCTGCTAATAAGGGCTTGAGATCTCTAGTTCAGGTCCTCAATTCATCGAATGAGGAAACCCAAGAATATGCAGCTTCAGTTCTGGCTGATTTGTTTATCACAAGACAAGACATCTGTGATAGTATTGCAACTGATGAGATTGTGCTTTCTTGCATGAAGCTGTTGACTAGCAAAACTCAAGTTGTTGCCACTCAATCAGCTCGAGCATTAAGTGCTCTGTCTCGTCCAACAAAGAACAAGGCTGCAAATAAAATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCTAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACTAGAGTTCTGGCAGAAGGGACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGATGCATTTTCCTGTAGGTGATGTTCTCAAGGGGAGTGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGATATGGACGGAACTGATGCTGCTGATGCTTTAGAAGTAATTGCATTGCTAGCCCGGACCAAAAAGGGTGTCAGCAACAATTACTCTGCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCCTGGCTGAGGGGCCTTCCCTTGTGCAAGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAGCCAGTCGTTCTTGGTGATTTGTTATCTACTAGTTCCAGATCTATTGGCTCATTGGCTAATAGAATAATGAACTCCTCCAATCTAGAAGTAAAAATTGGAGGGGCTGCCTTGCTAATTTGTGCTGCCAAGGAGAAGAAAGAGCTTTCAATGGATTCACTTGATATTTCTGGGCATCTGAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAGACTTTTAGGTATTCTTCGTTAGAAATTGAAGTTCTCACTTCTAAAGGTTATATGGAGAGAAATGGTTTTCAAGAAGTTGATGAGTTTGATAATCCTGATCCTGCCACTGCCTTGGGAAGCACTATTGCGATGTGGTTGCTTTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCTCACAATTATGGAAGCTGGTGGACTTGAAGTTCTCTCGGACAAACTTGGAAGATACACTTCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAATGCCTTGCTCTTGGCCATTTTATTTCAGGATGCAAATGTTGTTCAATCTCCTGTGACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGCAATAAGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGGCATGTAGAGTCAGATATGCCTAATCTCATGGATTTATCAGAAGAATTTTCTTTGGTACAAAACCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATCGAAGATGTAAAAGTGGGGTCTACTGCCAGGAAATCTATACCACTCTTGGTGGATCTCCTGAGACCAATACCAGAAAGGCCTACTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATAGCAATAAATTAATCCTTGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACTGAGGCCGCTATATCTGAGTTATTGAGAATATTATTTTGCAATTCTGATCTTGTTAAACATGAAGCATCAATTAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAACTGCTAGATACAGTGCTGCAAGAGCACTTCATGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAGACAAGCCATTCAGCCATTGGTTGACATGCTTAACACGACCTCAGGGAATGAGCAGGAGGCTGCTCTCATGTCCTTGATCAAGTTAACTTCAGAAAATTCTTCAAAAGTATCTCTTCTTACTGATATGGAAGGAAACCCACTTAAATGTTTATACAAAATACTGTCTTCTGCTTCATCCTTGGAACTGAAGAGCCATGCTGCCCAACTCTGCTTTGCTCTTTTTGCCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCATAGAACCCCTTATATTACTGTTGCAGTCAGGTTCTGAGACAGCAATAGAGTCTGGGGCTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATGTTGTGGATCTCCTTGTGAGCTTGGTTTCTGGTACTAACTATCAGCTTATCGAGGCTACCGTATCTGCTCTTATCAAATTGGGCAAAGATAGGACTCCAAGTAAACTGGACATGATGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTAGAATTAGCACCTAGCTCTTTATGCTCCACAATATCTGAGCTCTTTCGCATTTTAACTAATAGTAGTGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAATTTATGGGGACAGCATAGTGCGTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCCACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCGTCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACTAAGAATGCAGTTGTGCCCCTTGTACAGCTTGCAGGTATTGGAATATTAAACTTACAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCCACTAGTTGGCCAAAGGCTGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCACATGCACTCTGGGAATCCGCTGCTTTAGTTCTCTCTAATGTATTACATTCCAATGCCGATTACTACTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTTTTGCACTCAACACTTGAGAGTACAATTAGCATAGCACTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAGCAGATGATGGAAGCTGGAGTTATAGAGGCTCTGTTAGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGCAGATTATTAGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTGTCTAAGTATGCTATAGCACCTTTGTCCCAGTATCTCTTGGATCCACAAACCAGATCACAGTCTGGTAAGCTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGATCTAGTGCCTCTGTTTCTGCATGTCGGGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGGTGGTAGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAAGAATTGCTGCTGTCTATAAACACAGAAGTTGCTGCACAAGCTGCTTTACTGATCAAATTTTTGTTTTCTACACATACACTGCAAGAATATGTATCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAAGCGGTTTTGAAAACTTTGCATGTGATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCGCTTAAATCTGGTGGTGAAGCGGCTCAGGACTCTGTACTTGACACGTTTTGCTTGCTAAGACAATCTTGGTCAACTATGCCAATAGATATAGCAAAGTCCCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCACCTAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGGTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAGGCAAACTATGGGAAGCACTAATGCATTCTGCCGGTTAACAATAGGAAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACCTCTCCCGAATGGAAAGAAGGATTCACTTGGGCATTTGATGTACCTCCAAAGGGCCAAAAATTGCATATCATATGCAAAAGCAAGAATACTTTTGGAAAGACAACTCTGGGAAGAGTCACCATTCAAATTGATAAAGTTGTATCAGAGGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATGGTAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATCTCCAATGATGACATTTAA 6408 0.4154 MSKSPSHEQRQSIYSASLPGEFNEAMGMDDPESTMATVANFVEKLHANLSSPVEKETITACLLGIARRKKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTETRKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWSQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGPKNDISVRASAADALEALSSKSTMAKKAIVNADGIPILIGAIVAPSNECMQGDGGQALQEHSTRALANICGGMSALILYLGELSRAPRLDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQIEDILVTLLKPRDNKLIQERVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTTLCCDKIGLWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLRSGGPKGQEASAMALTKLVRIADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSIATDEIVLSCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLMHFPVGDVLKGSAQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKKGVSNNYSAWSALAEIPSSLELLVCCLAEGPSLVQDKAIKILSRLCGDQPVVLGDLLSTSSRSIGSLANRIMNSSNLEVKIGGAALLICAAKEKKELSMDSLDISGHLKPLIYSLVEMIKQTFRYSSLEIEVLTSKGYMERNGFQEVDEFDNPDPATALGSTIAMWLLSVIASFHIKSKLTIMEAGGLEVLSDKLGRYTSNPQAEYEDTEGIWINALLLAILFQDANVVQSPVTMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESDMPNLMDLSEEFSLVQNPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPTAPPVAVRLLISIADGSDSNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSDLVKHEASISSLNQLIAVLRLGSRTARYSAARALHELFDADNIRDSELARQAIQPLVDMLNTTSGNEQEAALMSLIKLTSENSSKVSLLTDMEGNPLKCLYKILSSASSLELKSHAAQLCFALFANSKIRADPVASECIEPLILLLQSGSETAIESGACAFERLLEDEQQVELAAAYNVVDLLVSLVSGTNYQLIEATVSALIKLGKDRTPSKLDMMKAGIIDNCLKLLELAPSSLCSTISELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIEALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSINTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEAVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLRQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00818 2135 Gene3D - 1163 1345 IPR011989 -
Phco2g00818 2135 SUPERFAMILY ARM repeat 1613 2005 IPR016024 -
Phco2g00818 2135 SUPERFAMILY ARM repeat 1188 1543 IPR016024 -
Phco2g00818 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Phco2g00818 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Phco2g00818 2135 CDD C2 2009 2099 - -
Phco2g00818 2135 Gene3D - 364 626 IPR011989 -
Phco2g00818 2135 Gene3D - 1346 1604 IPR011989 -
Phco2g00818 2135 Gene3D - 25 157 IPR011989 -
Phco2g00818 2135 Gene3D - 158 354 IPR011989 -
Phco2g00818 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Phco2g00818 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 10 2129 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Phco2g00818 2135 SMART C2_3c 2008 2104 IPR000008 -
Phco2g00818 2135 SUPERFAMILY ARM repeat 33 796 IPR016024 -
Phco2g00818 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Phco2g00818 2135 Gene3D - 859 1145 IPR011989 -
Phco2g00818 2135 SUPERFAMILY ARM repeat 854 1129 IPR016024 -
Phco2g00818 2135 Pfam C2 domain 2008 2107 IPR000008 -
Phco2g00818 2135 Gene3D - 627 821 IPR011989 -
Phco2g00818 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Phco2g00818 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Phco2g00818 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Phco2g00818 2135 Gene3D C2 domain 2008 2133 IPR035892 -
Phco2g00818 2135 Gene3D - 1610 2007 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00818 Phco-Chr2 9256972 9266384 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00818 2 9256972 9266384 Phco2g00818 2 9256972 9266384 ECH