Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00706 ATGATTGACAAGGACATGGTAAACGCTCTCCTTCTCAACGAGGCCGCTAGGGTTTTCGTTTTCCTCTTGTCTGCATCGCTTCAGGTTCTTTCCGTAAAGATGTCTCGCGTTTATGTTGGTAACTTGGATTCAAGAGTGACCGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTCGATGATAGGAGAGATGCCCAGGATGCTATTCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAACTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGTGGTGGCCGCTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCTTACGTGGTGGATCAGGAAGACGTCGTAGTCGCAGCCCACCCCGATTTCGTAGGAGCCCTAGCTATGGACGAAGTCCTCGTGGGCGATCTCCTAGGCGCCGCAGTTTATCGCCTCGTGGACGAAGCTACAGCAGGTCACCTCCATATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAACGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGA 627 0.5056 MIDKDMVNALLLNEAARVFVFLLSASLQVLSVKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00706 208 Gene3D - 110 172 - -
Phco2g00706 208 MobiDBLite consensus disorder prediction 99 119 - -
Phco2g00706 208 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Phco2g00706 208 FunFam Serine/arginine-rich splicing factor 7 35 102 - -
Phco2g00706 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 106 IPR000504 GO:0003723
Phco2g00706 208 Gene3D - 31 106 IPR012677 -
Phco2g00706 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 94 IPR000504 GO:0003723
Phco2g00706 208 FunFam Serine/arginine-rich splicing factor RSZ22A 119 176 - -
Phco2g00706 208 ProSiteProfiles Zinc finger CCHC-type profile. 122 137 IPR001878 GO:0003676|GO:0008270
Phco2g00706 208 SUPERFAMILY Retrovirus zinc finger-like domains 115 138 IPR036875 GO:0003676|GO:0008270
Phco2g00706 208 CDD RRM_SRSF3_like 36 104 - -
Phco2g00706 208 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Phco2g00706 208 MobiDBLite consensus disorder prediction 135 208 - -
Phco2g00706 208 SUPERFAMILY RNA-binding domain, RBD 31 117 IPR035979 GO:0003676
Phco2g00706 208 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 35 188 - -
Phco2g00706 208 SMART rrm1_1 36 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00706 Phco-Chr2 7315503 7321282 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00706 2 7315503 7321282 Phco2g00706 2 7315503 7321282 ECH