Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00697 ATGGGACTCACGCTAAACCCCAACAGACTCAGATATTGTGTGCCTCTTCATACCCCTCATTCCTTCGCCAATTCACCTCTTTCTCTTTCTCCATCTTCTGCTGGAGTCAAGGAGACTTGTTTCAACTGCACGAAGTTGTCTTTGCCGTCAACATCTTATGAGGAAGGAGAAGCTTTGCAGAAAGATTTTGGAAGGGTTTATGCATTTTCTGCTTTGGATACCTTGGAAAATGAGTCATTAGGAAGAGAAGAAACCGGGGTAAATAAAGGGAAGAGGTCACGGAGTAGTGTACATGAAATGTTTGATAATACCCAAATGCCTTTTGGAGAGGTATCTACTGTGTCTAAGAAGTTTGAGTCATTCACGCCACAGCATTTCCGTTTGTTAATGAAGAACCTTGATGTTTTGGAAGAGGCTTTTGCCGATTCAGAAGCACTGAGGTTGGAAAAGGCTATTAGATTGCAACTAGAAAAGCTTGGTGCTCTCGAGATATTCAATGTTTATCTATCAAGATCACTTGTGTCAGACTATGCTGATAAAGTACATAACAAGGGCAAATGTGTTGTCCCCTCTAGCAAGAAAAAGGAAAATAAAACTAGAAGAAAGAGAGAAATTGGTGTCACAGCAGTTTCATCACAGTCATTGACTTTAAAAGCTAATCAGGAAGATCTATTAGGATTCTCAGTTTCAGTTGTGAAAAGAGCAACAAATAGTAAAAATAAAAGAATGATGGTTGCTAAAAGGGAGGCAGAGATGGCAAAAGGTGTAAAGGTGCTGGCTGAGTTAGAGAAAATTAGGACAGCTTTAGAAGAGGATACCAAGCGAGTAGTGAGCTTGAATCACTGGGCCGGAGCATCTGGAGTTGATGAGAAGGTGCTACAGCAGCTATTGCATCATGGCTATTATTGTCGGGATGAGCTCATACGGAGTTCTCGTTCCTTAGTTCTATACCTTGCCAGAAAATACAGGGGTATGGGAATAGCTTTGGATGATTTACTTCAGGCAGGATATGTAGGTGTTCTCCAAGGAGCTGAGAGATTTGACAGTACAAGGGGCTACAAATTCTCAACCTATGTTCAGTACTGGATAAGGAAATCAATTTTAAGAGTGGTGGAACGATATTCTCGAGGAGTCATAATTCCTTGGTCATTAAACAGGGCAATAAAGCAAATCCAGAAAGCTCGAAAAGTCCTGAAGAGTACACACAAGAAAAGCCCAGATGATTGTGAAATTGCAAAGATGACAGGTCTTTCGCTAGATAAAATCAAATCAGCTAGCAATTGTCTGAGAATAGTTGCTTCAATTGATCAGAAGGTGGGGAATTGCCTTAGTATAGAATATAATGAACTTCTTCCCGATACAACAATCGAGAGCCCTGAAAATGGTGTCCTGAAGCAACATATGAAAAAAGACGTACATGATCTCCTGAAAGGCTTGAACTCAAGGGAAAGGCAAATATTAACCCTACGCTTTGGCCTTATTGATAACCAGCCCAAGTCTCTACAGGATATAGGGACGCTATTCAAAGTTAGCAAAGAGAGGATACGAAAAATAGAGAAAATCGCTCTAACAAAGTTAAGGAATGAGGCAACCACCTCAGATTTACATTATTATTTGGATCTGTAG 1626 0.4047 MGLTLNPNRLRYCVPLHTPHSFANSPLSLSPSSAGVKETCFNCTKLSLPSTSYEEGEALQKDFGRVYAFSALDTLENESLGREETGVNKGKRSRSSVHEMFDNTQMPFGEVSTVSKKFESFTPQHFRLLMKNLDVLEEAFADSEALRLEKAIRLQLEKLGALEIFNVYLSRSLVSDYADKVHNKGKCVVPSSKKKENKTRRKREIGVTAVSSQSLTLKANQEDLLGFSVSVVKRATNSKNKRMMVAKREAEMAKGVKVLAELEKIRTALEEDTKRVVSLNHWAGASGVDEKVLQQLLHHGYYCRDELIRSSRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPWSLNRAIKQIQKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQKVGNCLSIEYNELLPDTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILTLRFGLIDNQPKSLQDIGTLFKVSKERIRKIEKIALTKLRNEATTSDLHYYLDL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00697 541 NCBIfam sigma-70 family RNA polymerase sigma factor 304 529 IPR014284 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 Pfam Sigma-70 region 3 387 462 IPR007624 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 Gene3D - 380 456 IPR036388 -
Phco2g00697 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 444 532 IPR013324 -
Phco2g00697 541 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 380 452 IPR013324 -
Phco2g00697 541 CDD Sigma70_r4 469 527 - -
Phco2g00697 541 Pfam Sigma-70 region 2 307 375 IPR007627 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 Gene3D - 457 540 IPR036388 -
Phco2g00697 541 Gene3D - 188 376 - -
Phco2g00697 541 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 121 539 - -
Phco2g00697 541 Pfam Sigma-70, region 4 475 528 IPR007630 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 Coils Coil 384 404 - -
Phco2g00697 541 PRINTS Major sigma-70 factor signature 331 344 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 PRINTS Major sigma-70 factor signature 479 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 PRINTS Major sigma-70 factor signature 500 515 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 PRINTS Major sigma-70 factor signature 515 526 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 PRINTS Major sigma-70 factor signature 355 363 IPR000943 GO:0003700|GO:0006352|GO:0006355
Phco2g00697 541 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 243 376 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00697 Phco-Chr2 7139203 7143665 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00697 2 7139203 7143665 Phco2g00697 2 7139203 7143665 ECH