Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00691 ATGCTTCAATCTCACATTAACATTTTCTCACCCTTCACCGCCACACTCCACTCCAACCAACTCCATTCCTCGCGTGTCCGTTCCTCTTCCGCTCCGGCACGGCGTCGTTTAGTCACCACCGCAACTCCGGGCGACGCCAATCTCCGGCACCTCACTTCGCGCATTGTTCAACTCACCCGACGGAAACAGCTTCGGCAGATTTTGGATGAGATTGAGGTTGCGAAAAGACAGTTCGGGAAGCTGAACACGATTGTGATGAACGCGGTGATGGAGGCTTGTGTCCGTTGCGGTGATATCGATTCAGCGATTAGGATATTCGCAGAGATGAAAAAGGGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACACTTTTGAAGGGGTTAGGTGAGGCACGGAGAGTCGATGAGGCTTTTGAAGTGCTTGAAACTGTGGAAAATGGCACTGCTATGGGAAGTCCAAACTTGTCAGCTCCATTGATATATGGTCTGCTAAATGCCTTAATCAAAACAGGAGACTTGCGTCGTGCACATGGTCTCCTTGCCCGTTATGGTTTTGTGTTTCGAGAAGGTGGCAAATTTTCAGTCTCAGTATACAACATACTAATTAAGGGCTACATAAACTCAGGCTGTCCACACACTGCAATAAACATGCTGAATGAAATTCTACGTCAAGGTATAATGCCGGACCGGCTCACATATAACACACTAATTTTAGCATGTGTTGAGAGTGAAAAGTTGGATACTGCAATGCAATTTTTTGAGGAAATGAAGGGCAAAGCACAGAAATTTGTCAATGATGATATGTTTCCAGATATTGTTACATATACGACATTGCTTAAGGGTTTTGGGAAGGCAAAGGATCTTGCTTCAGTTCTGAAAATAGTTCTGGAAATGAAATCTCGTTGGGAATTATACATCGATAGAACTGCTTACACTGCAATAGTTGATGCTTTTCTAACATGTGGCTCAGTTAAGGGTGCTCTTTGTATTTTTGGAGAAATATTGAAACAGGCTGGTTTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGGGCCTTCGCTTTTATAGGAGATTATGATCTAGTTAAAGTTTTACATAAACGGATTTGGCCAGATTCATCAGGAACCATATTATTAGCAGCTCAAGAAGAGGCTGATCACCTTCTAATGGAAGCAGCACTGAATGCTGGCCAGATTAATGTTGCCATTAAAACACTTGCTGAGATTGTTTCAAGATGGAAGGGCATATCCTGGACAAGTCGTGGGGGCATGGTAGCTTATCGTATTGAGGCCATGTTGGGATTCTCAAAGTCTTTGTTCAGTCCCTACTTACTTCCTCAGGTTTCACCTTCTGAACCAATTGAGAACTATATGATACGATTTGATGCAACACGGCCACTACAAGGTACCATAAAGCTAAGGAAGGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTGTTGTAGATGAGTGGGGTAGTTGTATAGGGCTGCTACACCGTGAAGACTGCAACCAGTTGGATGCCCCACTTTCAACAATAATGAGAAGCCCTCCTCCCAGTGTTACAAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGAGAAGCGATACCCGATGGTTATCATTGTAAATTACACAAACTCATATGCTACTCCTCCATATAGCTCTAGAGCAGTTGGAGTTTTTACACCAGAACAATTAAGTAGGTTTATCAAGCCGGTATCTCGAGTAAAATGGACAGACCTTTGTGAAAGGTGTGAAAGGTAA 1794 0.4359 MLQSHINIFSPFTATLHSNQLHSSRVRSSSAPARRRLVTTATPGDANLRHLTSRIVQLTRRKQLRQILDEIEVAKRQFGKLNTIVMNAVMEACVRCGDIDSAIRIFAEMKKGDGCGVDTVTYATLLKGLGEARRVDEAFEVLETVENGTAMGSPNLSAPLIYGLLNALIKTGDLRRAHGLLARYGFVFREGGKFSVSVYNILIKGYINSGCPHTAINMLNEILRQGIMPDRLTYNTLILACVESEKLDTAMQFFEEMKGKAQKFVNDDMFPDIVTYTTLLKGFGKAKDLASVLKIVLEMKSRWELYIDRTAYTAIVDAFLTCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFIGDYDLVKVLHKRIWPDSSGTILLAAQEEADHLLMEAALNAGQINVAIKTLAEIVSRWKGISWTSRGGMVAYRIEAMLGFSKSLFSPYLLPQVSPSEPIENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPVVDEWGSCIGLLHREDCNQLDAPLSTIMRSPPPSVTSSTSVGHVVDLILEKRYPMVIIVNYTNSYATPPYSSRAVGVFTPEQLSRFIKPVSRVKWTDLCERCER 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00691 597 Gene3D - 477 578 IPR046342 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 343 IPR002885 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Phco2g00691 597 Gene3D Tetratricopeptide repeat domain 42 149 IPR011990 GO:0005515
Phco2g00691 597 Gene3D Tetratricopeptide repeat domain 158 262 IPR011990 GO:0005515
Phco2g00691 597 Gene3D Tetratricopeptide repeat domain 263 438 IPR011990 GO:0005515
Phco2g00691 597 PANTHER OS09G0431600 PROTEIN 16 590 IPR044781 -
Phco2g00691 597 CDD CBS_pair_SF 476 553 - -
Phco2g00691 597 ProSiteProfiles CBS domain profile. 521 591 IPR000644 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
Phco2g00691 597 Pfam PPR repeat family 82 129 IPR002885 -
Phco2g00691 597 Pfam PPR repeat family 196 241 IPR002885 -
Phco2g00691 597 NCBIfam pentatricopeptide repeat 274 302 IPR002885 -
Phco2g00691 597 NCBIfam pentatricopeptide repeat 233 258 IPR002885 -
Phco2g00691 597 NCBIfam pentatricopeptide repeat 86 118 IPR002885 -
Phco2g00691 597 NCBIfam pentatricopeptide repeat 120 143 IPR002885 -
Phco2g00691 597 NCBIfam pentatricopeptide repeat 198 230 IPR002885 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Phco2g00691 597 Pfam Pentatricopeptide repeat domain 262 301 IPR002885 -
Phco2g00691 597 SUPERFAMILY CBS-domain pair 461 556 IPR046342 -
Phco2g00691 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00691 Phco-Chr2 7058881 7068149 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00691 2 7058881 7068149 Phco2g00691 2 7058881 7068149 ECH