Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00579 ATGAATAATAGCGTTTGTTGGCCTTACTTTGATCCTGATTTTGATACTCTCCCAGAAAGAATATATGGTCCACCTTGCCAAGTCTGCATCGACAATGAAAGCATGAAAGGATGCACAGTGGTGAAGGTAGATAGCGTTAACAAGGAGGGTCTCCTTCTAGAAGTGGTGCAAGTTTTGACAGACATGAACCTTCAAATCTGCAAAAGCTATATTTCAAGTGATGCTGGTTGGTTCATGGATGTGTTTCATGTTAGAGACGAAAATGGCAACAAACTAACGGACCAGAAAGTCATCAACGAAATCCAACAGGCCATAGGAAAATCAAGAGCCTCTCCACCATCACAACAACAACAACAGAGCAATATCAACAATAACAACATTAATTCAATCATCACAACAATCACCAACTACAGAACCTACTGCAAAAAACTCATCCCGTTACTTTCTAACTCACCTGAACAGTACACAGCCATCGAAATGACCGGTACCGATCGTCCCGGATTATTTTCTGAAATTTCAGCAGCCTTGGTGGATCTCCATTGCAACATAGTTGAAGTTCACGCATGGAGTCACAATGCGCGACTCGCATGCGTGGCATACATATCGGATCAATCCACCGATTCCGCCATTGAAGACCCTTCTCGTCTAAGCTCCATAGAGGATCACTTGACAACTGTGTTACGTGCCGCCACCAACCCTAATGATGATGTCACGAGCAGCTACCCAGATGTGAAGACCTCAGAGCTTCTAGGAGGAGAAGGGAACATGACAAGCGTGGAACGGAGGTTGCACCAGCTTATGCTTTCTGTGAGGGACTTTGAGGCTCCCTCTTCCCCCAAAGAGATGAAGGGAAGGAAGAGAATGGTGACAATCGAAAGTTGTGAACAAAAGGGGTATTCAATTGTAAGCATTGAGTGTAAGGATCGTCCCAGACTCATGTTTGATACAGTTTGCACGTTAACAGACATGGAGTACGTTATTTTCCATGCTTCCATCAGTTCCCATGGAGGCTATGCATTTCAGGAATATTTTATCAGGCACGTAGATGGGTATGCTTTAGATACTGCATGTGAGAAGGAACGAGTAATAAAATGCTTAGAGGCAGCCATAGAACGTCGGGTTTGTGAGGGTGTTAGGTTAGAGTTGTGTGCAGAGAACAGAGTAGGGTTACTATCGGACATAACACGAGTCCTGCGAGAGAATGGACTGGTGGTTGTTCGAGCAGACGTTGAAACGCATGGAGAGAAATCCGTGAACGCTTTCTATGTGAAGGACATATCAGGGAACGAGGTTGATGTAGAATACTTCAGCAACTCAGTGAAGAGGGAAATGGGTCCAATCGTCACACTCCATGTCAAGAATGACAGCACCAGAAGAAAAACAACTTCACCTAAACGTTCACCTTCTCTCTCCTTCGGAGGCATGCTAAGATCTCGGATTGAACGTCTTTCTCATGGCTTCATTATATGA 1470 0.4449 MNNSVCWPYFDPDFDTLPERIYGPPCQVCIDNESMKGCTVVKVDSVNKEGLLLEVVQVLTDMNLQICKSYISSDAGWFMDVFHVRDENGNKLTDQKVINEIQQAIGKSRASPPSQQQQQSNINNNNINSIITTITNYRTYCKKLIPLLSNSPEQYTAIEMTGTDRPGLFSEISAALVDLHCNIVEVHAWSHNARLACVAYISDQSTDSAIEDPSRLSSIEDHLTTVLRAATNPNDDVTSSYPDVKTSELLGGEGNMTSVERRLHQLMLSVRDFEAPSSPKEMKGRKRMVTIESCEQKGYSIVSIECKDRPRLMFDTVCTLTDMEYVIFHASISSHGGYAFQEYFIRHVDGYALDTACEKERVIKCLEAAIERRVCEGVRLELCAENRVGLLSDITRVLRENGLVVVRADVETHGEKSVNAFYVKDISGNEVDVEYFSNSVKREMGPIVTLHVKNDSTRRKTTSPKRSPSLSFGGMLRSRIERLSHGFII 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00579 489 CDD ACT_ACR_2 156 229 - -
Phco2g00579 489 SUPERFAMILY ACT-like 153 226 IPR045865 -
Phco2g00579 489 CDD ACT_ACR_3 299 373 - -
Phco2g00579 489 Pfam ACT domain 158 206 - -
Phco2g00579 489 Pfam ACT domain 379 428 IPR002912 -
Phco2g00579 489 SUPERFAMILY ACT-like 376 428 IPR045865 -
Phco2g00579 489 CDD ACT_ACR_1 38 109 - -
Phco2g00579 489 ProSiteProfiles ACT domain profile. 40 115 IPR002912 -
Phco2g00579 489 SUPERFAMILY ACT-like 35 105 IPR045865 -
Phco2g00579 489 Gene3D - 151 232 - -
Phco2g00579 489 ProSiteProfiles ACT domain profile. 157 237 IPR002912 -
Phco2g00579 489 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 24 452 IPR040217 -
Phco2g00579 489 ProSiteProfiles ACT domain profile. 379 455 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00579 Phco-Chr2 5540049 5544366 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00579 2 5540049 5544366 Phco2g00579 2 5540049 5544366 ECH