Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00455 ATGGGGTGGGGTCACCTCGGAAGGCATGGCTCAGATTCAGGCGTCGACACGGAGGCTGGTCCGAGCACCGCCGCCACTGAGCCACGGCGGTTTCCACTGGCGGCTCAGCCAGAAATGATGCGCGCCGCCGAGAAGGATGATCAATACGCCTCTTTCGTCTACGAAGCCTGTCGTGACGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCGGTGGCTTACCAAAACGAGACGAAGCTCTTAGGGCAGATGCTTTACTACGTTCTGACAACTGGCTCTGGACAACAAACCCTTGGAGAGGAATACTGCGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCCCTTTTCATTGTATATCAGTCGGCTATTCCATATATGGCAGAACGGATTAGCTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAGTCTGCCGAGGGTTCTGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGACACTGGTCCTTTATCCTCGTCGGGACAATCTATTACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCAACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGCTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTTTATTATCATATATCCAAACGTGCTGCTGGCATCCGTTATGTATTTATCGGAAAAGCATCAAACCAAAGACCTAGATACCAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGCTTCAGTTAATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCCGTTTTAAATGAAGAGGGTACTCCGGCAACTCCTGATATTGACAGAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGCTAGTGGGGTTAGCAAGTGCACACTTTGCCTTAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCAGACTTCTAG 1185 0.4827 MGWGHLGRHGSDSGVDTEAGPSTAATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYMAERISSRIASRGIVLADSESAEGSGENAHRSPGSQISDTGPLSSSGQSITTLSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAASVNQASFASHDRSAGHGLPVLNEEGTPATPDIDRGSWVSDSSSSEHHAASGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00455 394 FunFam Peroxisome biogenesis factor 10 315 391 - -
Phco2g00455 394 SMART ring_2 340 377 IPR001841 -
Phco2g00455 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Phco2g00455 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 391 IPR013083 -
Phco2g00455 394 MobiDBLite consensus disorder prediction 158 178 - -
Phco2g00455 394 SUPERFAMILY RING/U-box 339 383 - -
Phco2g00455 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 392 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Phco2g00455 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Phco2g00455 394 MobiDBLite consensus disorder prediction 1 33 - -
Phco2g00455 394 MobiDBLite consensus disorder prediction 155 178 - -
Phco2g00455 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Phco2g00455 394 CDD RING-HC_PEX10 338 389 - -
Phco2g00455 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00455 Phco-Chr2 4064019 4068368 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00455 2 4064019 4068368 Phco2g00455 2 4064019 4068368 ECH