Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00450 ATGAAGCTTTGGTGCTGTCTATGCTTCACTGAGGAAGAACAAGATAACCTAAACCTCATGAAGGAAGAGGACATTTCCGAAAACGACGTCGTTCCCGCCGTTGGACCCATCACCGTCTCTGACCACGATGCTAACGACAACCGCGAAGATGGACGATTCGCGATGACGCCGGTGCCGCCGCGCGCCGAGACATTGGTCTCGTGGTCCGGCGAGTGCAGCGCCGCCGCGTGCTCGGACAGCACCGTCGCAGGCGGCGTCGAGAGCCGCGATTTGAGCCACAAGCGCGCCAAGTTCTACGCCGATTTCGAGGAGCGTTTTTTTTCGACGAATGCAGGGAAATGCGGTGCATCTAATGAATGTGGAGATTATGACTACATTAAAGATTCTCTTCGACCCAACGGTGAGACTTGTTGTGATACATTTGCATTGATGGGCGCTGGTGAGGATTGTGGCTTTGATTCCGGCATTGTGGAAGATGGTGAAGGAGATAGTAGTGATATCTTGAAAGTTGAAGATGTAGAGGTCAGAATGGATCTTACCGACGACTTGTTGCATATGGTTTTTTCGTTTTTGGATCATCCCAATCTTTGCAAAGCTGCCAGGGTTTGTAAACAGTGGCGAAGTGCAAGTGCTCATGAAGATTTCTGGAAATGCTTGAATTTTGAAGATCGGAACATTTCTGTCGAACAATTTGAGGACATGTGTAGGCGTTATCCCAATGCCACAGCAGTGAGCATATCTGGTTCTACTATTTACTTGCTTGTCATGAGGGCCATCTCTTCATTAAGGAATCTAGAGGTTCTTACATTAGGAAGAGGACAAATAGCTGATACTTTTTTCCATGCTTTAGCTGATTGTTCTATGTTAAAAAAGTTGAATATCAATGATTCTACACTTGGCAATGGCATTCAAGAGATAACTATAAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTAAGGTGCCCACAACTTGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTGCTCAATTGTCCACTTTTGCATAAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATACGAGCTGCTGCAACTTCATGCCCTCAACTTGTCTCACTGGACATTTCAAATTGTTCTTGTGTCAGTGATGAAACACTGCGTGAAATAGCTTCGAGTTGTGCTAACCTTAGTTTTCTTGATGCATCATACTGCCCAAACATATCTTTGGAGTCTGTTAGACTGCCAATGTTGACAGGTCTAAAGCTTCATAGTTGTGAGGGGATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTGATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGTTGACATCAGTGTCTCTGGATCTTCCCCATTTGCAGACTATTAGATTGGTACACTGTCGCAAGTTTGCTGATTTGAACTTGAGGACTATGATGCTTTCTAATATTCTGGTATCAAACTGTCCTGCACTTCATCGAATCAATATCACTTCAAATTCACTTGAAAAATTAGCATTGCAAAAGCAAGAAAGTTTAACCACGTTAGCTCTGCAGTGCCAATCTTTAGAAGAAGTGGACCTCTCAGAGTGTGAATCATTGACAAACTCTATATGTGATGTTTTTAATGATGTTGGAGGATGCCCTATGCTGAAATCACTAGTTCTTGCTAATTGTGAGAGCTTGACCTCAGTTCGGTTCTTCAGCACCTCTTTAGTCAGTCTTTCCCTTGCTGATTGTCGGGCAATCACTTCTCTGGAGCTCACATGCCCTAACCTTGAGAAAGTCATTTTGAATGGTTGTGATCATTTAGAAAGAGCATCCTTTTGTCCGGTTGGTCTTCGATCTCTCAATTTAGGAATATGTCCAAAATTAAATATACTCAGCATAGAAGCCATGGTTATGGTCTCACTTGAATTGAAAGGTTGTGGTGTACTGTCTGAAGCATCAGTTAATTGTCCTCTCTTGACATCTTTGGATGCTTCCTTTTGCAGCCAACTCACTAATGAATGCTTGTCTGCAACAACTGCTTCATGCCCATTGATTGAATCATTAATATTGATGTCATGCTCATCAATTGGTTTGGATGGACTTTGTTCTTTGCAGCGACTCCCAAATTTGACCCTACTGGATCTGTCATATACTTTTTTGGTCAATTTGTATCCTGTTTTTGAGTCTTGTACGCAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCGTCACTTGAACCCCTCTACAAGAGGGGTGCTTTACCAGCCCTTCAGGAGTTAGACTTGTCTTATGCAACACTGTGTCAGTCTGCTATTGAGGAGCTTCTTTCTTGCTGCACACACCTTACACATGTGAACTTGACTGGCTGTGCCAATATGCATGACTTAAATTGGGGATGTAGTCGGGGGCATATTGCTGGTGTAAATGTGCTATCCATTACAAGTTCTTATGAAAATGTCCACGAGCTAAGTGAGCAACCCACTCGATTACTGCAGAACTTAAACTGTGTGGGATGTTTGAACATTCGGAAAGTTTTCATTCCATTAACGGCACATTGTTCCTGTTTGTTGTTTTTAAACCTTTCTCTATCAACTAATTTGAAAGAGGTTGATGTTGCTTGTCTCAACCTAAGCTGGCTTAACCTAAGCAATTGTAACTCTTTGGAAGTTTTGAAGCTAGATTGTCCAAGATTGACCAGTCTATTCCTCCCGTCTTGCAACATTGATGAAGAAGCAGTAGAAGCTGCTATATCCAAATGCACTATGCTGGAGACTCTTGATGTTCGCTTCTGTCCGAAGATTAGCTCAATGAGCATGGGAAGATTGCGTGCAGCATGTCCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAACTTCATAA 2919 0.4289 MKLWCCLCFTEEEQDNLNLMKEEDISENDVVPAVGPITVSDHDANDNREDGRFAMTPVPPRAETLVSWSGECSAAACSDSTVAGGVESRDLSHKRAKFYADFEERFFSTNAGKCGASNECGDYDYIKDSLRPNGETCCDTFALMGAGEDCGFDSGIVEDGEGDSSDILKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRSASAHEDFWKCLNFEDRNISVEQFEDMCRRYPNATAVSISGSTIYLLVMRAISSLRNLEVLTLGRGQIADTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHKLDIGSCHKLPDAAIRAAATSCPQLVSLDISNCSCVSDETLREIASSCANLSFLDASYCPNISLESVRLPMLTGLKLHSCEGITSASMAAIAHSDMLEVLELDNCSLLTSVSLDLPHLQTIRLVHCRKFADLNLRTMMLSNILVSNCPALHRINITSNSLEKLALQKQESLTTLALQCQSLEEVDLSECESLTNSICDVFNDVGGCPMLKSLVLANCESLTSVRFFSTSLVSLSLADCRAITSLELTCPNLEKVILNGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMVMVSLELKGCGVLSEASVNCPLLTSLDASFCSQLTNECLSATTASCPLIESLILMSCSSIGLDGLCSLQRLPNLTLLDLSYTFLVNLYPVFESCTQLKVLKLQACKYLTDSSLEPLYKRGALPALQELDLSYATLCQSAIEELLSCCTHLTHVNLTGCANMHDLNWGCSRGHIAGVNVLSITSSYENVHELSEQPTRLLQNLNCVGCLNIRKVFIPLTAHCSCLLFLNLSLSTNLKEVDVACLNLSWLNLSNCNSLEVLKLDCPRLTSLFLPSCNIDEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAACPSLKRIFSSLSTS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00450 972 FunFam F-box/LRR-repeat protein 15 171 420 - -
Phco2g00450 972 SUPERFAMILY F-box domain 177 227 IPR036047 GO:0005515
Phco2g00450 972 Gene3D - 175 218 - -
Phco2g00450 972 ProSiteProfiles F-box domain profile. 173 219 IPR001810 GO:0005515
Phco2g00450 972 PANTHER OS10G0396666 PROTEIN 157 972 - -
Phco2g00450 972 SUPERFAMILY RNI-like 626 967 - -
Phco2g00450 972 FunFam F-box/LRR-repeat protein 15 732 817 - -
Phco2g00450 972 SMART LRR_CC_2 739 764 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 560 590 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 376 401 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 908 932 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 792 827 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 423 448 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 602 627 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 532 556 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 691 716 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 469 494 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 665 690 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 933 958 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 767 791 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 286 309 IPR006553 -
Phco2g00450 972 SMART LRR_CC_2 350 375 IPR006553 -
Phco2g00450 972 CDD F-box_FBXO41 181 217 - -
Phco2g00450 972 Gene3D Ribonuclease Inhibitor 822 970 IPR032675 -
Phco2g00450 972 SUPERFAMILY RNI-like 422 640 - -
Phco2g00450 972 Gene3D Ribonuclease Inhibitor 219 484 IPR032675 -
Phco2g00450 972 Gene3D Ribonuclease Inhibitor 639 730 IPR032675 -
Phco2g00450 972 Gene3D Ribonuclease Inhibitor 731 818 IPR032675 -
Phco2g00450 972 FunFam F-box/LRR-repeat protein 15 isoform C 825 968 - -
Phco2g00450 972 Gene3D Ribonuclease Inhibitor 485 638 IPR032675 -
Phco2g00450 972 SMART fbox_2 179 219 IPR001810 GO:0005515
Phco2g00450 972 SUPERFAMILY RNI-like 229 481 - -
Phco2g00450 972 Pfam F-box-like 181 220 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00450 Phco-Chr2 3957059 3966461 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00450 2 3957059 3966461 Phco2g00450 2 3957059 3966461 ECH