Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00406 ATGAGTTCCATTTCTAGTCCATCCATGGACACAACAACAACAACACCCATCGTCACCTCGGATTCCCATGGTTTGTCAGATTCAAGGAGAATAGGTGAACGTGTGTGTGCAGCGTTGATGCCATTGATGGTGGTTGTTGAGGTTTTGATGTTTGCTGTCACGGGTTGTTTGGGTAATTGCTCAAGCAGCATTATGCAGAAGCACAAACGTTGCTCCTACACTGCTAAGGATTTCGCAACCCTAGCTACTGCAACAAGATTCACAGTTAAAGAAGTGGAGGCTTTGCATGTGTTGTTTAAGAGGTTAAGTAGCTCCTTAATCGATGATGGTTTTATTCACAAGGAGGAGCTTCAATTGGCATTGTTTCAGACCCCAAACGGGAAAAATCTTTTCCTAGATCGAGTGTTTGATGTTTTTGACCAAAAAAGAAATGGTGTAATTGAGTTTGACGAATTTGTCCTTGCACTCAGTGTTTTCCATCCAAATGCACCTATAGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACCTCAGCCAAACTGGATTTATTGGACGAGAGGAAGTGAAGCAAATGGTTGTAGCCATGTTGATTGAATCAGACATGAATATTCCTGATGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGTGGATAAGGACAGTGATGGTAAAATCAGTAAAGAAGATTGGAAAGCTTTTGTGAGTCAAAATCCATCCCTCTTGATGAACATGACACTTCCTTATTTGAAGGATATCACCACTGTGTTTCCAAATCAAGGTAACTCAGGCATACCAAGGTTTCCTTTCTCAGTAGAAGTCAGGGAGAAGAGAAGCAATGACAGATATGAGCTGCAGAGGAACTCGGCGGAGCCACCGTTCAGCTTGACGATGACGACGGTGGAAATGTGTGCTCTCCGTGCACCGCCGATACTGCTGGAGGGTCTCGCCTAG 960 0.4281 MSSISSPSMDTTTTTPIVTSDSHGLSDSRRIGERVCAALMPLMVVVEVLMFAVTGCLGNCSSSIMQKHKRCSYTAKDFATLATATRFTVKEVEALHVLFKRLSSSLIDDGFIHKEELQLALFQTPNGKNLFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPNAPIDEKIDFAFKLYDLSQTGFIGREEVKQMVVAMLIESDMNIPDDLLEAIVDKTIADVDKDSDGKISKEDWKAFVSQNPSLLMNMTLPYLKDITTVFPNQGNSGIPRFPFSVEVREKRSNDRYELQRNSAEPPFSLTMTTVEMCALRAPPILLEGLA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00406 319 Gene3D - 78 264 - -
Phco2g00406 319 SMART efh_1 212 240 IPR002048 GO:0005509
Phco2g00406 319 SMART efh_1 131 159 IPR002048 GO:0005509
Phco2g00406 319 SMART efh_1 168 196 IPR002048 GO:0005509
Phco2g00406 319 SUPERFAMILY EF-hand 79 260 IPR011992 -
Phco2g00406 319 Pfam EF-hand domain pair 167 236 IPR002048 GO:0005509
Phco2g00406 319 PANTHER CALCINEURIN B 60 261 IPR045198 GO:0005509|GO:0019722|GO:0019900
Phco2g00406 319 PRINTS Recoverin family signature 182 200 - -
Phco2g00406 319 PRINTS Recoverin family signature 135 156 - -
Phco2g00406 319 PRINTS Recoverin family signature 228 248 - -
Phco2g00406 319 MobiDBLite consensus disorder prediction 1 26 - -
Phco2g00406 319 CDD EFh 168 238 IPR002048 GO:0005509
Phco2g00406 319 ProSiteProfiles EF-hand calcium-binding domain profile. 127 162 IPR002048 GO:0005509
Phco2g00406 319 FunFam calcineurin B-like protein 3 77 264 - -
Phco2g00406 319 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Phco2g00406 319 Pfam EF hand 132 152 IPR002048 GO:0005509
Phco2g00406 319 CDD EFh 132 193 IPR002048 GO:0005509
Phco2g00406 319 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Phco2g00406 319 ProSiteProfiles EF-hand calcium-binding domain profile. 208 243 IPR002048 GO:0005509
Phco2g00406 319 MobiDBLite consensus disorder prediction 1 25 - -
Phco2g00406 319 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00406 Phco-Chr2 3517422 3529463 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00406 2 3517422 3529463 Phco2g00406 2 3517422 3529463 ECH