Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00212 ATGTTTGCTCAAACCCTTCCACCAACACCCAACATGCAATCGGAGCCCAGAATGTCCACCACCGACCCTTTAACCGACGACGAGTTCACAATGCGGACCAGCAGCTCTGCGTCGCCCATGAGTCCTTATTACTACGAACAGGGAAGGCTCAGCGGTGAGGGTTCTCCGATGATGATGTCGCCGTGGAACCAGACCGCCAGTTCGCCGTTTTCCAAGCCGCAGTGGTCGCAGAACGATGACGGCGGGAATTTGCCGCAGAACGCGCTCGTGGGTTCTCTTGTCCGAGAGGAGGGACACATATACTCGCTGGCGGCTTCGGGCGACCTCTTGTACACGGGTTCCGACAGCAAGAACATCCGCGTGTGGAAGAACCTTAAGGAGTATTCGGGGTTCAAATCCAACAGCGGATTGGTCAAAACCATAATTCTGTCGGGACAGAAAATCTTCACGGGGCACCAGGACGGCAAAATCCGCGTCTGGAAGGTGTCGCCGAAGAACCCGAGCGTGCACAAGCGCGCCGGCACGTTGCCCACGCTTAAAGACATCTTCAAGAGCTCCATTAAACCCAGCAACTACGTCGAGGTTCGGCGACACAAAACGGCGTTATGGATAAGACATTCGGACGCCGTTTCGTGTTTGAGTCTCTCTGATAACAAGTTGTATCTATACTCTGCGTCGTGGGACAGAACAATCAAGGTGTGGAGGATCGCAGACTCCAAATGCCTCGAGTCCATCCACGCGCACGACGACGCCGTCAACGCTGTGGTGTGCGGCGAAGATGCGGTGATGTTTTCGGGGTCGGCGGACGGCACGGTGAAGGTGTGGCGGCGGGAGGCGCGTGGGAAGGGGCTGAAGCACGCGGCGGTGAAAACGCTGCTGAAGCAGGAGTGCGCGGTGACAGCGCTGGCGGTGGACGCGGATGCTTCGATGTTGTACAGCGGCGCCTCCGATGGGCTCGTCAACTTCTGGGAGCGAGAGAAGGGCTACGTGCACGGCGGCGTCCTCAAGGGCCACAAGCTCGCCGTGCTGTGCCTCACTGCCGCGGGGGCGTTAGTGTTCAGCGGGTCCGCAGATAAGACTATATGCGTGTGGAGAAGAGACGGTCTGATTCACACGTGCGTGTCTGTTCTGACGGGTCACGACGGTCCCGTGAAATGCTTTGCCGTGGAGGAGGACCGCGAAGCCGCCGCCGCCGCAGCCAGAGACCGGCGTTGGATTTTGTACAGTGGCAGTTTGGACAAATCGGTTAAGGTTTGGAGCGTATCGGAATCAATGAACAATAATCAGGGGCAGCATCAGCGCATGGGTTCTGATGCGGACTCGTTGCCCTCCATTTCCGACAGTAGTGTCTCTTCGGGCTGGGCCAACGGGAGAAACTGA 1380 0.579 MFAQTLPPTPNMQSEPRMSTTDPLTDDEFTMRTSSSASPMSPYYYEQGRLSGEGSPMMMSPWNQTASSPFSKPQWSQNDDGGNLPQNALVGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEYSGFKSNSGLVKTIILSGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRRHKTALWIRHSDAVSCLSLSDNKLYLYSASWDRTIKVWRIADSKCLESIHAHDDAVNAVVCGEDAVMFSGSADGTVKVWRREARGKGLKHAAVKTLLKQECAVTALAVDADASMLYSGASDGLVNFWEREKGYVHGGVLKGHKLAVLCLTAAGALVFSGSADKTICVWRRDGLIHTCVSVLTGHDGPVKCFAVEEDREAAAAAARDRRWILYSGSLDKSVKVWSVSESMNNNQGQHQRMGSDADSLPSISDSSVSSGWANGRN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Phco2g00212 459 CDD WD40 97 420 - -
Phco2g00212 459 MobiDBLite consensus disorder prediction 1 42 - -
Phco2g00212 459 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 424 IPR045182 -
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 275 - -
Phco2g00212 459 MobiDBLite consensus disorder prediction 1 49 - -
Phco2g00212 459 SUPERFAMILY WD40 repeat-like 89 424 IPR036322 GO:0005515
Phco2g00212 459 MobiDBLite consensus disorder prediction 426 459 - -
Phco2g00212 459 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 333 364 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 206 234 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 372 420 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Phco2g00212 459 Pfam WD domain, G-beta repeat 124 161 IPR001680 GO:0005515
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 364 IPR001680 GO:0005515
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Phco2g00212 459 Gene3D - 283 456 IPR015943 GO:0005515
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Phco2g00212 459 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Phco2g00212 459 PRINTS G protein beta WD-40 repeat signature 407 421 IPR020472 -
Phco2g00212 459 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Phco2g00212 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 236 - -
Phco2g00212 459 Gene3D - 75 196 IPR015943 GO:0005515
Phco2g00212 459 FunFam BnaA09g28200D protein 193 280 - -
Phco2g00212 459 SMART WD40_4 124 161 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 196 235 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 285 324 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 328 365 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 238 276 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 86 123 IPR001680 GO:0005515
Phco2g00212 459 SMART WD40_4 370 420 IPR001680 GO:0005515
Phco2g00212 459 Gene3D - 197 282 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00212 Phco-Chr2 1639879 1641558 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01443 7 13429363 13433248 Phco2g00212 2 1639879 1641558 PCT