Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g02042 ATGTCGGGTCTCTACAATTCCAACTTCTCTCCGGTCAGAGCTGCTTCTCCTCAGATTAGAACCAACCCAGAAGTTGACAGTCAGTACCTCACGGAGTTGCTGGCAGAGCATCAGAAGCTTGGTCCTTTCATGCAAGCTCTTCCCATTTGCACTCGTCTCTTGAATCAAGAAATATTGAGAGTTTCTGGAATGCTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGGCACAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTCATGTCAAGTGTCACTGGATCGGGGTTAGGTGGATGGAATAGTCTTCAGCAAGAGAGGTTACGAGGAACTCCTGGAATGACAATGGACTGGCAAGTTGCACCTGCAAGTCCTAGTTCATTTACAGTTAAGAGGATTTTGCGCTTGGAAATTCCCGTTGATACATACCCCAATTTCAATTTTGTTGGAAGGCTTCTGGGACCCAGGGGCAATTCTCTAAAAAGGGTTGAAGCTTCTACAGGTTGCCGGGTGTATATTAGAGGAAAGGGTTCAATAAAAGATCCGGACAAGGAAGAAAAATTAAGAGGAAGACCAGGCTATGAGCATCTCAATGAGCCACTCCATATCTTGATTGAAGCTGATTTACCTGCTAATATTGTTGACATTAGGCTCCGACAGGCTCAGGAAATTATAGAAGAATTGCTCAAACCTGTGGAGGAGTCTGAGGACTATATCAAGAGGCAGCAGTTGCGTGAATTGGCGATGCTGAATTCAAACTTCAGAGAAGAGAGTCCTGGACCAAGTGGAAGTGTATCTCCATTCAACTCCAGTGGAATGAAACGAGCCAAAACTGGTCGATGA 846 0.4527 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKLGPFMQALPICTRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGSGLGGWNSLQQERLRGTPGMTMDWQVAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g02042 281 PANTHER RNA-BINDING PROTEIN RELATED 22 272 IPR045071 -
Phco1g02042 281 MobiDBLite consensus disorder prediction 1 20 - -
Phco1g02042 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Phco1g02042 281 MobiDBLite consensus disorder prediction 256 281 - -
Phco1g02042 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Phco1g02042 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Phco1g02042 281 SMART kh_6 131 231 IPR004087 GO:0003676
Phco1g02042 281 MobiDBLite consensus disorder prediction 255 281 - -
Phco1g02042 281 Pfam KH domain 148 184 IPR004088 GO:0003723
Phco1g02042 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g02042 Phco-Chr1 60155567 60160290 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02408 3 50627373 50632169 Phco1g02042 1 60155567 60160290 PCT