Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01968 ATGAACTTCAACACCACTCTTCAATCCCATGACTATGCTCTTCTTCAATCCATTCAACACTTCCTCCTAGACGATACCCAAGACATAAGTGCTCTCACGGCGGTTTTGGCCACACCCAGCGGCGTTTCACTTCGGGAGAGCGACGCCGGATCCACGTCCACCCTTTTCACCACCGCCGTTAACTCTCCATCGGCCTCGTTGGGACAGTCAACAGCTACCTCCACGGCGGCGCCTGGAGAATATACGGTGGCGCGTGGTGGTAACACGCCTTACCAGAACTTCAAGGGAGTGAGACGTAGACCTTGGGGGAAGTTTGCGGCTGAGATAAGAGATCCGAAGAGAAACGGCGCGAGAGTTTGGCTTGGGACTTACGAGTCGGCTGAGAGTGCGGCTTTGGCTTACGATCGAGCCGCTTTTGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTAATTGGAAGCCATGAGCCGAGCCAAGCCGAAAAGAGTAATGGCTGA 504 0.5317 MNFNTTLQSHDYALLQSIQHFLLDDTQDISALTAVLATPSGVSLRESDAGSTSTLFTTAVNSPSASLGQSTATSTAAPGEYTVARGGNTPYQNFKGVRRRPWGKFAAEIRDPKRNGARVWLGTYESAESAALAYDRAAFEMRGSKAKLNFPHLIGSHEPSQAEKSNG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01968 167 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 FunFam Ethylene-responsive transcription factor 2 92 152 - -
Phco1g01968 167 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Phco1g01968 167 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 PANTHER DNA-BINDING DOMAIN 70 157 IPR044808 GO:0003700|GO:0009873
Phco1g01968 167 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
Phco1g01968 167 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01968 Phco-Chr1 59399600 59400103 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco1g01968 AP2 5.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01968 1 59399600 59400103 Phco1g01968 1 59399600 59400103 ECH