LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco1g01965	ATGAACCCTCATGCTTCAAACACCAAGGAGAATGCCCTTGATCTCTCTGAGCTCCCTGCAACGACGCTGTTCAGCCGTAGCTCCAGCTTCCGGAGCATTTTCTTCGCGGAGAACTGGGCGGAGCTGCCGCTGAAGGAGGACGACGCCGACGACATGGTTATCTTCGGCGCTTTGCGTGAGGCCGCAGCCACCACCGGATGGTTCTCCGCAAATGGAAATGGGGTGAGCAACGTAGCAGCTAAAATGGAAAATGAGGGTCAAAGCAGTGACCCTAATGCCGCGAGTGGAACTCACCCGCCTCCGGTGAAAGGGCTGAGCTACCGCGGCGTGCGGAGGAGGCCATGGGGGAAGTACGCGGCGGAGATAAGAAGTGCCAAGAAGAATGGTGGGAGAGTGTGGCTTGGAACCTATGAAACTGCTGAGGACGCAGCTTTGGCTTATGATCGAGCTGCATTTAAAATGCATGGCTCCAAAGCAAAGCTCAATTTTCCTCATTTGATTGGTTCGGATGATTCAGAACTAATTAGGGTTACATCAAAGAAACGTTCATTGGAGGTTTTATCATCTAATTTATCGTCCTCGTTGGTCACTGCAAAACGGAGTAAAGATAATTCTCTGGTTCATTCGGAGATGAATGACTTAGATATGTGGTAG	654	0.5092	MNPHASNTKENALDLSELPATTLFSRSSSFRSIFFAENWAELPLKEDDADDMVIFGALREAAATTGWFSANGNGVSNVAAKMENEGQSSDPNAASGTHPPPVKGLSYRGVRRRPWGKYAAEIRSAKKNGGRVWLGTYETAEDAALAYDRAAFKMHGSKAKLNFPHLIGSDDSELIRVTSKKRSLEVLSSNLSSSLVTAKRSKDNSLVHSEMNDLDMW	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco1g01965	217	PRINTS	Ethylene responsive element binding protein signature	107	118	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	PRINTS	Ethylene responsive element binding protein signature	130	146	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	ProSiteProfiles	AP2/ERF domain profile.	106	164	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	MobiDBLite	consensus disorder prediction	83	108	-	-
	Phco1g01965	217	Pfam	AP2 domain	107	156	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	FunFam	Ethylene-responsive transcription factor 2	106	165	-	-
	Phco1g01965	217	CDD	AP2	107	166	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	PANTHER	DNA-BINDING DOMAIN	85	189	IPR044808	GO:0003700\|GO:0009873
	Phco1g01965	217	Gene3D	AP2/ERF domain	106	165	IPR036955	GO:0003700\|GO:0006355
	Phco1g01965	217	SMART	rav1_2	106	170	IPR001471	GO:0003700\|GO:0006355
	Phco1g01965	217	SUPERFAMILY	DNA-binding domain	107	165	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco1g01965	Phco-Chr1	59376794	59377447	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco1g01965		AP2	6.6e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco1g01965	1	59376794	59377447	Phco1g01965	1	59376794	59377447	ECH