Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01958 ATGGGCAACGAAGAAGAAGAAGAATTGGTTGCTGAAGTTGAAGCAGTGGAAGCCGTGTATGGAACCGATTGTGTCCTTCTCAGTTCATTTCCTCCCCATTTTCACCTCTTTCTCAAACCCAGAACTGCTGATGTTTCCTCCCAACAGTTTGTAGAAGCTGTTCTGGAGATACGAGCTACCTCACAGTATCCAAAAGAAACACCTTCTATTAAGCTTGTGGATTGCAAGGGTCTGGATGAACAGAGACAGAAACATCTATTAAATTACATACAAAGTAAAGCCCGTGAGATCTCCCCTTGTTTAATGCTTGTAGCTCTTTGTGAGGAAGCTGTTGAGAAACTTTCAGCTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTATTCCCTTTGGTCCCAGAAGATCAGCAAAGAGAAAGTTTGCCTTTTATGAAGTTAATGTCTTGTTTTCATTGCTTTCACAGTGAGTGTATCATTAGATGGTGGAAATGGCTTCAAAATTCTAAAGAATCAGACTCTGCCAATACAGATAGTGCAGCTGCACATCGTAACCAAGATAATCATAAGAAAATGGAAGAGAGTGTTGGAAACTGCCCAGTCTGTCGCAAACCTTTTCTTGCCAAGGATTTGGACCATGTGCTTGCCCTAGTTGGATCATATTCTTCCCAATTGAGTTCAGACAATGAAGAACTAAACGATGACGAAATGCTCCTTCAATCAGAGGATGAGATGATTAGGAGACAGAAATTTGAAGCCATCCTAAATTTACAGAAGGAGAACAGTGGCTTGATTGAACCCAAAAAAGATATAGTCATATTACCTGGTATGTATCTTCCACAACCAGTTGCAATGCCGAGCTCTACATCAACTAAGGAATCTGATGAGCAGACACAAAATGAACCACCTGCAGCTGTGTCAGGAAAACACGCCGGTGGGACATCCAATGGAGCTAGTTCTAGCAGGCAGAGGAATTTCGGTCCAAGGAGGCAGAAAGCAAGAAGTGATAACCACTCTAGTTCAACTGTAAGAAATACAAGAAAACCAGTACAACAGTGGGTAAGAAGAGATAGTCCTAGCAATAAGCAATAG 1089 0.416 MGNEEEEELVAEVEAVEAVYGTDCVLLSSFPPHFHLFLKPRTADVSSQQFVEAVLEIRATSQYPKETPSIKLVDCKGLDEQRQKHLLNYIQSKAREISPCLMLVALCEEAVEKLSAMNHPDGDCPLCLFPLVPEDQQRESLPFMKLMSCFHCFHSECIIRWWKWLQNSKESDSANTDSAAAHRNQDNHKKMEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQLSSDNEELNDDEMLLQSEDEMIRRQKFEAILNLQKENSGLIEPKKDIVILPGMYLPQPVAMPSSTSTKESDEQTQNEPPAAVSGKHAGGTSNGASSSRQRNFGPRRQKARSDNHSSSTVRNTRKPVQQWVRRDSPSNKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01958 362 MobiDBLite consensus disorder prediction 282 362 - -
Phco1g01958 362 SUPERFAMILY RING/U-box 116 208 - -
Phco1g01958 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 216 IPR013083 -
Phco1g01958 362 MobiDBLite consensus disorder prediction 311 325 - -
Phco1g01958 362 MobiDBLite consensus disorder prediction 282 303 - -
Phco1g01958 362 MobiDBLite consensus disorder prediction 337 362 - -
Phco1g01958 362 FunFam RWD domain-containing protein 120 217 - -
Phco1g01958 362 Pfam RWD domain 8 113 IPR006575 GO:0005515
Phco1g01958 362 SUPERFAMILY UBC-like 5 114 IPR016135 -
Phco1g01958 362 ProSiteProfiles RWD domain profile. 11 117 IPR006575 GO:0005515
Phco1g01958 362 ProSiteProfiles Zinc finger RING-type profile. 124 202 IPR001841 -
Phco1g01958 362 SMART RWD2001b 11 117 IPR006575 GO:0005515
Phco1g01958 362 MobiDBLite consensus disorder prediction 173 193 - -
Phco1g01958 362 SMART ring_2 124 201 IPR001841 -
Phco1g01958 362 PANTHER RING FINGER PROTEIN 25 3 350 IPR039133 GO:0061630
Phco1g01958 362 Gene3D Ubiquitin Conjugating Enzyme 2 119 IPR016135 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01958 1 59263040 59268605 Phco1g01958 1 59263040 59268605 ECH