Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01888 ATGGCGATGTTGTTGAAGCACGTGAGGGCATCGTCGTCGCTGCTGAAGCAGCACGTGACCCGCGCGCACCTGCTGTCGCGGCCGTTCACCACGACCGAGGGCCACCGTCCCTCCATCGTCCACAAACGCAGCCTCGACATCCTCCACGATCCTTGGTTCAATAAAGGAACAGCTTTTTCCATGACAGAACGAGATCGTCTTGATCTACGGGGACTGCTTCCTCCGAATGTCATGTCTCCTGACCTACAGATTGAACGCTTCATGGTTGATCTGAAGAGGCTTGAAGTTCAAGCAAGAGATGGACCTTCTGATCCTAATGCGTTGGCCAAGTGGCGGATACTTAATCGCTTGCATGACAGGAATGAGACTATGTACTATAAGGTTTTGATTGCCAAAATAGAGGAATATGCACCAATAGTGTACACTCCAACAGTGGGCCTTGTCTGTCAGAACTATAGTGGACTATTTAGAAGACCGAGAGGAATGTATTTCAGTGCTGAGGATCGTGGCGAAATGATGTCTATGGTGTATAACTGGCCGGCTGAGCAGGTTGATATGATTGTAGTTACTGATGGGAGCAGAATCCTGGGACTTGGGGATCTTGGAGTTCAAGGTATTGGCATTGCCATTGGGAAGCTTGATCTATATGTTGCTGCTGCTGGGATAAATCCTCAAAGGGTACTTCCTGTGATGATTGATGTTGGTACTAACAATGAGAAGTTACTGGAAGACCCCTTATATTTGGGATTGCAGCAACATCGACTTGATGGTGATGACTATCTGGCTGTTGTTGATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGAGGTACAGAAGTACCTACAGAATGTTCAATGATGATGTGCAGGGAACAGCCGGTGTTGCAATTGCTGGACTTCTAGGTGCTGTAAGGGCACAAGGAAGACCGATGATTGACTTCCCAAAGCAGAAGATTGTTGTTGCTGGTGCTGGAAGTGCTGGAATTGGGGTTCTTAATGCAGCCAGAAAAACAATGGCAAGAATGTTGGGTAATAATGAAGTAGCTTTTGAGAGTGCAAAAAGTCAGTTTTGGGTTGTTGATGCAAAGGGATTAATATCTGAAGGACGTGAAAATATTGATCCAGATGCCCTTCCTTTTGCAAGAAATTTGAAGGAAATGGATCGCCAAGGACTGAGAGAAGGAGCAAGCCTTGTGGAAGTGGTCAAGCAAGTGAAGCCCGATGTCCTCCTAGGATTATCAGCTGTTGGAGGATTGTTCTCAAATGAGGTATTAGAAGCCCTCAAGGGTTCAACATCAACAAGACCAGCCATATTTGCCATGTCAAATCCTACAAAGAATGCTGAATGCACCCCTGAAGAAGCATTCTCCATTTTGGGTGACAACATTATTTTTGCAAGTGGAAGTCCATTCAGTAATGTGGATCTTGGAAATGGTCATATTGGCCACTGCAACCAGGGAAACAACATGTACCTCTTTCCAGGCATTGGTCTCGGAACTCTGCTATCAGGTGCTAGGATAATCTCTGATGGCATGCTACAGGCTGCGTCTGAGCGTCTGGCTACATATATGAGTGAAGAGGAGGTCCTCAAAGGGGTTATTTTCCCTTCAACATCCAGAATCCGAGATATTACAGAGAAGGTAGCCGCAGCTGTTATAAAAGAAGCGTTGGAGGAGGACTTAGCTGAAGGATATCATGGAATGGATGCTAGGGAGCTAAAGAAACTTAGCGAGGATGAAATCGCAGAATATGTGAAGAATAACATGTGGAATCCAGAGTACCCTACATTAGTTTACAAGAAAGAATGA 1866 0.4539 MAMLLKHVRASSSLLKQHVTRAHLLSRPFTTTEGHRPSIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSPDLQIERFMVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNETMYYKVLIAKIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLEDPLYLGLQQHRLDGDDYLAVVDEFMEAVFTRWPNVIVQFEDFQSKWAFKLLQRYRSTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNEVAFESAKSQFWVVDAKGLISEGRENIDPDALPFARNLKEMDRQGLREGASLVEVVKQVKPDVLLGLSAVGGLFSNEVLEALKGSTSTRPAIFAMSNPTKNAECTPEEAFSILGDNIIFASGSPFSNVDLGNGHIGHCNQGNNMYLFPGIGLGTLLSGARIISDGMLQAASERLATYMSEEEVLKGVIFPSTSRIRDITEKVAAAVIKEALEEDLAEGYHGMDARELKKLSEDEIAEYVKNNMWNPEYPTLVYKKE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01888 621 Gene3D - 42 305 IPR037062 GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 452 468 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 220 242 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 124 148 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 338 354 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 279 297 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 184 213 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 PRINTS Malic enzyme signature 304 320 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 FunFam Malic enzyme 42 305 - -
Phco1g01888 621 SMART malic_2 118 298 IPR012301 GO:0004471
Phco1g01888 621 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 21 307 IPR046346 -
Phco1g01888 621 Pfam Malic enzyme, NAD binding domain 308 575 IPR012302 GO:0051287
Phco1g01888 621 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 308 617 IPR036291 -
Phco1g01888 621 FunFam Malic enzyme 306 620 - -
Phco1g01888 621 SMART Malic_M_2 308 576 IPR012302 GO:0051287
Phco1g01888 621 Pfam Malic enzyme, N-terminal domain 118 298 IPR012301 GO:0004471
Phco1g01888 621 ProSitePatterns Malic enzymes signature. 304 320 IPR015884 GO:0004471
Phco1g01888 621 PIRSF ME 8 619 IPR001891 GO:0004470|GO:0004471
Phco1g01888 621 Gene3D - 306 621 - -
Phco1g01888 621 PANTHER MALIC ENZYME-RELATED 28 613 - -
Phco1g01888 621 CDD NAD_bind_1_malic_enz 308 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01888 Phco-Chr1 58491087 58543345 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01888 1 58491087 58543345 Phco1g01888 1 58491087 58543345 ECH