Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01887 ATGACGAGCATGGAGAGTTTGATCGGTTTGGTGAACAGAATCCAGCAGGCCTGCACCGTGCTCGGCGACTACGGCGGCGACGCCGATAGCAACGCCTTGTCGTCTCTATGGGAAGCTCTTCCTTCCGTAGCCGTCGTCGGCGGCCAGAGTTCGGGTAAGTCTTCGGTTCTGGAAAGCATCGTTGGACGTGACTTTCTTCCAAGAGGATCAGGGATTGTGACGAGGCGTCCATTAGTGTTGCAGCTTCACAAGGTTGATGGCAAAGCGAAGGAGTATGCAGAGTTTCTTCACATGCCAGGGCAAAAGATCACTGATTATGCCTTTGTTCGCCAGGAGATTCAGAATGAAACTGATAGAGTAACGGGGAGGACAAAGCAAATATCTCCTGTTCCAATTCATCTCAGCATTTACTCTCCACACGTTGTCAACCTAACTTTGATTGATTTGCCTGGATTGACTAAAGTTGCTGTAGAGGGACAGCCTCAGACTATTGTCGAAGACATTGAAAATATGGTTCGGTCTTATGTTGAGAAGCCTAATTGTATTATACTGGCAATATCTCCAGCCAACCAAGACATAGCAACTTCTGATGCTATTAAGCTTTCAAAGGAGGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTGACAAAGCTTGATTTAATGGACAAAGGAACTAATGCGTTGGATGTCCTTGAAGGAAGATCTTACCGTCTGCAACATCCCTGGGTTGGTGTAGTAAATCGATCCCAAGCAGATATCAATAAAAACGTTGATATGATTGTTGCTAGACGTAAGGAGAGTGAGTATTTTGAAACCAGTCCCGACTATGGACACTTAGCCAATAAAATGGGTTCCGTATACCTTGCAAAACTTCTCTCACAGAATTTGGAGTCCGTAATTAGGGCACGGATACCCAGTATAACATCTTTGATAAACAAAACAATTGAAGAACTTGAGTCAGAGATGAATCAAATTGGGAGACCAATTGCTGTTGATGCTGGAGCTCAACTATACACCATCCTAGAACTATGCCGCGCATTTGATAAGATATTCAAGGAGCATTTAGACGGAGGGCGAGCGGGTGGAGATAAAATCTATAATGTCTTTGACAATCAGCTTCCTGCTGCATTAAGGAAGCTTCCATTTGACCGTCATCTATCTCTTCAAAATGTAAAGAAAGTGGTATCAGAGGCAGATGGTTACCAACCTCACTTAATTGCCCCAGAGCTAGGTTACCGGCGCCTGATCGAGGGAGCTCTCAGCTACTTTAGAGGCCCAGCTGAAGCTTCAGTTGATGCAGTTCACTTTGTCTTGAAAGAACTTGTGAGGAAAGCAATAGCTGAAACTAAGGAGCTGAGACGTTTCCCAACTCTTCAAGCCGAACTAGCTGCTGCTACAAGTGAAGCTTTAGAGAGGTTCCGTGAAGAGAGTAAGAAGACAGCTATTCGACTTGTCGACATGGAAGCGTCGTATCTCACTGTGGAGTTCTTCCGGAGACTTCCTCAAGAAATGGAGAAAGCCGGAAATCCAGCTAATCCAGCTACCCCAAATGAGGATCGATACGGAGAAGGGCATTACAGGAGGATTGGATCAAATGTATCTTCCTATATTGGTATGGTGTCAGACACTCTCAGGAACACTATTCCAAAGGCTGTGGTTTTTTGTCAAGTCAGAGAAGCAAAACTATCATTGCTAAACCATTTCTACACACTAATAGGGAAGAAAGAGGCTAAGCAGCTATCCCAGTTGTTAGATGAAGACCCTGCCTTGATGGAGAGAAGGCAACAATGTGCCAAAAGGCTTGAACTATATAAAGCGGCAAGGGATGAAATTGATTCGGTTTCCTGGGCTCGATGA 1860 0.4505 MTSMESLIGLVNRIQQACTVLGDYGGDADSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKVDGKAKEYAEFLHMPGQKITDYAFVRQEIQNETDRVTGRTKQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQPQTIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLSKEVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGVVNRSQADINKNVDMIVARRKESEYFETSPDYGHLANKMGSVYLAKLLSQNLESVIRARIPSITSLINKTIEELESEMNQIGRPIAVDAGAQLYTILELCRAFDKIFKEHLDGGRAGGDKIYNVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPELGYRRLIEGALSYFRGPAEASVDAVHFVLKELVRKAIAETKELRRFPTLQAELAAATSEALERFREESKKTAIRLVDMEASYLTVEFFRRLPQEMEKAGNPANPATPNEDRYGEGHYRRIGSNVSSYIGMVSDTLRNTIPKAVVFCQVREAKLSLLNHFYTLIGKKEAKQLSQLLDEDPALMERRQQCAKRLELYKAARDEIDSVSWAR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01887 619 Pfam Dynamin GTPase effector domain 524 615 IPR003130 GO:0003924|GO:0005525
Phco1g01887 619 PRINTS Dynamin signature 65 82 IPR022812 -
Phco1g01887 619 PRINTS Dynamin signature 188 206 IPR022812 -
Phco1g01887 619 PRINTS Dynamin signature 40 58 IPR022812 -
Phco1g01887 619 PRINTS Dynamin signature 138 155 IPR022812 -
Phco1g01887 619 PRINTS Dynamin signature 207 223 IPR022812 -
Phco1g01887 619 PRINTS Dynamin signature 230 249 IPR022812 -
Phco1g01887 619 SMART GED_2 522 615 IPR003130 GO:0003924|GO:0005525
Phco1g01887 619 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 37 306 IPR030381 GO:0005525
Phco1g01887 619 Pfam Dynamin central region 227 494 IPR000375 -
Phco1g01887 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 314 IPR027417 -
Phco1g01887 619 CDD DLP_1 40 306 IPR001401 GO:0003924|GO:0005525
Phco1g01887 619 FunFam dynamin-related protein 1E 4 315 - -
Phco1g01887 619 FunFam Dynamin-related protein 1C 337 595 - -
Phco1g01887 619 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 66 75 IPR019762 -
Phco1g01887 619 Gene3D - 4 315 IPR027417 -
Phco1g01887 619 ProSiteProfiles GED domain profile. 527 619 IPR020850 -
Phco1g01887 619 SMART dynamin_3 4 257 IPR001401 GO:0003924|GO:0005525
Phco1g01887 619 PANTHER DYNAMIN 5 615 IPR022812 -
Phco1g01887 619 Gene3D Dynamin, middle domain 332 585 - -
Phco1g01887 619 Pfam Dynamin family 43 218 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01887 Phco-Chr1 58453001 58459945 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01887 1 58453001 58459945 Phco1g01887 1 58453001 58459945 ECH