Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01843 ATGACCAGCCATGCACCCTTCTGCTGCACCTCCAGGGATTCTAACCTTCATATGAGTAGCTTGTGCAGAATAAACCACAGCAAAGGTTGTTTTGTACCATGTATGTTTGGGAGGTCAATGGTTGGAATTCAAAGTACATCTTATAATGTGGAGAACTATGGTGCTCATGGCAATGGAGAATCTGATGATTCCCAAGCCATTTTAAGTGCATGGAAAGAGGCATGTGGAACAGAAGGGACATCAACTCTAGTTATACCACAAAATAAAGTATTCTTGGTGAAGAACATAATCCTGAGTGGTCCTTGCAAGGCCACAAGTATTCATATGCAGCTTGAAGGGAAAATAGTTGCACCTCATAAGAATGAATGGACAAACGATCTGAAAGTTGAAGATAAGTCCTCTTTGATTTTAATCACAGACGTAAATGGTCTGACAATTGATGGAAATGGAGAAATCAATGGCTTTGGTTCTGCTTGGTGGAAATGCCCTTCTTGTCAAAGACCAAAGGTTATTAGTTTCCAAAATTGCAATGATCTGAGAGTTAGTTATCTGAGCATCATTGATAGTCCACGAGCTCACGTAACAATAGATGGTTGTAACAATGCTGTCTTCTCCAATATCAATGTTCATGCTCCTGCTGACAGCCCCAACACTGATGGATTTGACATTTGTGCTTCAAAATATATCACCATTCAAGATTCCATTATAGGAACTGGTGATGATTGTATTGCCATCAATGGTGGCTCCTCATTCATCAATGCTACAGGAATTGCATGTGGACCAGGCCATGGAATAAGTGTTGGCAGCCTGGGAAAAGATGGTATGCATGAGACAGTTGAACAAGTTCATGTACGAAATTGCAGCTTCACAAACACCCAAAATGGAGCAAGAATCAAGACATGGCAGGGTGGATTAGGTTATGCAAGAAAAATCACTTTTGAGAAAATCACATTAACAAAGGCTTTCAACCCTATAATTATAGACCAGAACTATGGTTATAATGATTTCGAGAGTGATACAGTGGAAGTGAGTGAGGTGACATTCAGAGGGTTTGAAGGAACAAGTGGAGATGAGAAAGCTATTGACCTTAGTTGCCACTCACCAGGTTGTTTCAACATTGTGTTGGATCATATTAATATTGCCTCTTCTCAACCAGAAAAACCAGCTTCTTGTTCTTGCAGTAATGCCCATGGAACAACTACATCTACCATTCCAAATTGTTCTTGCTTATTGAAATGA 1239 0.4003 MTSHAPFCCTSRDSNLHMSSLCRINHSKGCFVPCMFGRSMVGIQSTSYNVENYGAHGNGESDDSQAILSAWKEACGTEGTSTLVIPQNKVFLVKNIILSGPCKATSIHMQLEGKIVAPHKNEWTNDLKVEDKSSLILITDVNGLTIDGNGEINGFGSAWWKCPSCQRPKVISFQNCNDLRVSYLSIIDSPRAHVTIDGCNNAVFSNINVHAPADSPNTDGFDICASKYITIQDSIIGTGDDCIAINGGSSFINATGIACGPGHGISVGSLGKDGMHETVEQVHVRNCSFTNTQNGARIKTWQGGLGYARKITFEKITLTKAFNPIIIDQNYGYNDFESDTVEVSEVTFRGFEGTSGDEKAIDLSCHSPGCFNIVLDHINIASSQPEKPASCSCSNAHGTTTSTIPNCSCLLK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01843 412 Gene3D - 40 409 IPR012334 -
Phco1g01843 412 PANTHER - 46 399 - -
Phco1g01843 412 ProSitePatterns Polygalacturonase active site. 256 269 IPR000743 GO:0004650|GO:0005975
Phco1g01843 412 SMART pbh1 226 247 IPR006626 -
Phco1g01843 412 SMART pbh1 308 329 IPR006626 -
Phco1g01843 412 SMART pbh1 199 225 IPR006626 -
Phco1g01843 412 SMART pbh1 279 300 IPR006626 -
Phco1g01843 412 Pfam Glycosyl hydrolases family 28 75 399 IPR000743 GO:0004650|GO:0005975
Phco1g01843 412 SUPERFAMILY Pectin lyase-like 43 410 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01843 Phco-Chr1 58029130 58032258 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g01843 1 58029130 58032258 Phco1g01843 1 58029130 58032258 ECH