Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01479 ATGGTAGCAGATTCTAAGTCCAAATCCGACCTCTCCTTCGGCAAAACCTTTGCCAGCAGTGCTTTTTCTGCATGTTTCGCTGAGTTGTGTACTATTCCGTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGCAGTTGGTGATGTAATCTCCTTACCTAAATATAAGGGTATGCTGGGAACAGTTGGTACCATTGCGAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGAATTGTGCCAGGGTTACATCGTCAGTGTTTGTACGGAGGTTTAAGAATTGGGTTATATGAGCCTGTGAAGTCTTTGTATGTGGGGAAGGACCATGTTGGAGACGTTCCATTGTCAAAGAAAATTCTTGCTGCATTCACAACTGGTGCAGTGGCAATTGCAGTGGCAAATCCAACTGATCTTGTTAAAGTTAGACTTCAAGCAGAAGGAAAACTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTCGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAATGGTATCATCAATGCTGCTGAACTAGCCAGCTATGATCAAGTGAAACAGACTATTTTGAAAATTCCAGGTTTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGAGCAGGGTTTTTTGCTGTCTGTATTGGCTCCCCAGTAGATGTGGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAAGAACACCCTCGATTGTTTTATCAAAACATTAAAGAATGATGGACCTATGGCCTTCTATAAAGGGTTCCTCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGACTAAAAAGTTCGTCAAAAATTTAGAGTCATCCTGA 918 0.4303 MVADSKSKSDLSFGKTFASSAFSACFAELCTIPLDTAKVRLQLQKQAAVGDVISLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKSLYVGKDHVGDVPLSKKILAAFTTGAVAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSSYKNTLDCFIKTLKNDGPMAFYKGFLPNFGRLGSWNVIMFLTLEQTKKFVKNLESS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01479 305 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
Phco1g01479 305 Pfam Mitochondrial carrier protein 114 209 IPR018108 -
Phco1g01479 305 Pfam Mitochondrial carrier protein 10 108 IPR018108 -
Phco1g01479 305 Pfam Mitochondrial carrier protein 216 300 IPR018108 -
Phco1g01479 305 Gene3D Mitochondrial carrier domain 7 304 IPR023395 -
Phco1g01479 305 FunFam Mitochondrial uncoupling protein 1 14 303 - -
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 169 186 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 18 30 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 287 305 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 212 230 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 PRINTS Mitochondrial brown fat uncoupling protein signature 99 111 IPR002030 GO:0006839|GO:0031966
Phco1g01479 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 206 IPR018108 -
Phco1g01479 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
Phco1g01479 305 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 14 297 - -
Phco1g01479 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01479 Phco-Chr1 50885402 50889510 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02159 3 47689246 47692520 Phco1g01479 1 50885402 50889510 PCT