Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00994 ATGGCGGGTGAATCTGATATGCCCGAAAACAACATCTCTTGTGCTAACTGTGCCAAACCCGCTAATCTTCAGTGCCCAAAATGCGTGGAATTGAAGCTTCCTCGTGCAGGTTCTGCCTTCTGCTCTCAGGAATGTTTCAAATCTTCATGGAGCTCTCACAAATCAGTGCATCTGAAGGCAAAACTATCCTCACCAGACACCCAAAATTCAGGCTCAGTCAGTGAAGGTTGGTTATATTGTTTGAAGAGTGGGCAGGCTCGAACACCAAAGCTTCCTTACTTTGACTGGACTGGATCACTGCGGCCTTATCCCATTTCTGGTAAACGGGTTGTCCCAGATCAAATTGATAAGCCTGATTGGGCTGATGATGGAATTCCAAAAATTGAGCCCAATAGTGGTCTGCAGTATACTGTTGAGGTCAAAACTCCAGATCAAATCGAGAGAATGAGGGAAACTTGTCATATTGCAAGGGAGGTGTTAGATGCAGCTGCTAGGATTATTCAGCCTGGTGTGGTGACTGATGAGATTGATAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGGTATCCATCTCCCCTCAATTACAATTTCTTCCCCAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGCCATGGAATTCCTGACGCGAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCTCTGTGTACTATAAAGGTGTTCATGCTGATCTCAATGAAACATACTTTGTGGGAAACGTTGATGAAGAGTCTTTCCAATTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGATACGGTTCCGCGAAATTGGTGAAGTTATTAGTCGTCATGCTTCGATGTCTGGCTTCTCAGTGGCAAGATCATATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATGCTAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGACAGACCTTTACAATTGAACCAATGATCAATGCTGGTGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGATGTTACAACCGATGGTAAACGAAGTGCTCAATTTGAGCACACTCTTCTGGTGACAGATACTGGTGTTGAAGTTTTAACAGGGAGGTTGCAGACATCACCAAATGTTTTTCCTTGGCTAAATTCATAA 1194 0.4389 MAGESDMPENNISCANCAKPANLQCPKCVELKLPRAGSAFCSQECFKSSWSSHKSVHLKAKLSSPDTQNSGSVSEGWLYCLKSGQARTPKLPYFDWTGSLRPYPISGKRVVPDQIDKPDWADDGIPKIEPNSGLQYTVEVKTPDQIERMRETCHIAREVLDAAARIIQPGVVTDEIDRVVHEATIAAGGYPSPLNYNFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVSVYYKGVHADLNETYFVGNVDEESFQLVKCTYECLEKAISIVKPGIRFREIGEVISRHASMSGFSVARSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTDVTTDGKRSAQFEHTLLVTDTGVEVLTGRLQTSPNVFPWLNS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00994 397 Gene3D Creatinase/methionine aminopeptidase superfamily 94 393 IPR036005 -
Phco1g00994 397 NCBIfam methionine aminopeptidase, type I 139 383 IPR002467 GO:0006508|GO:0070006
Phco1g00994 397 PANTHER METHIONINE AMINOPEPTIDASE 12 384 - -
Phco1g00994 397 SUPERFAMILY HIT/MYND zinc finger-like 12 55 - -
Phco1g00994 397 FunFam Methionine aminopeptidase 94 390 - -
Phco1g00994 397 PRINTS Methionine aminopeptidase-1 signature 225 241 IPR001714 -
Phco1g00994 397 PRINTS Methionine aminopeptidase-1 signature 203 216 IPR001714 -
Phco1g00994 397 PRINTS Methionine aminopeptidase-1 signature 295 307 IPR001714 -
Phco1g00994 397 PRINTS Methionine aminopeptidase-1 signature 326 338 IPR001714 -
Phco1g00994 397 CDD MetAP1 146 382 IPR002467 GO:0006508|GO:0070006
Phco1g00994 397 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 301 319 IPR002467 GO:0006508|GO:0070006
Phco1g00994 397 Hamap Methionine aminopeptidase [map]. 138 384 IPR002467 GO:0006508|GO:0070006
Phco1g00994 397 Pfam Metallopeptidase family M24 147 375 IPR000994 -
Phco1g00994 397 Gene3D - 3 61 - -
Phco1g00994 397 SUPERFAMILY Creatinase/aminopeptidase 92 383 IPR036005 -
Phco1g00994 397 Pfam zf-MYND-like zinc finger, mRNA-binding 15 58 IPR031615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00994 Phco-Chr1 10216229 10226196 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00994 1 10216229 10226196 Phco1g00994 1 10216229 10226196 ECH