Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00938 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCCCCTTTTCTCACTAGAGATCTTCACTTACACCCTCACCACCAATTTCAACCCCACCACAACCACCAAAACACGGAGGATGAAGCTGCCAATGGCCGCGGCCAGAAGCGAGATCGCGACGAGAACACCGGCAGTGGAGGCGGGGCTACCACGCCCCCCCACGCCGGCGGAGATGGCCAGGAACCCGGGTCAGGAGATGGAGGAGGAAGTGAAATGGGGAGAAGGCCAAGAGGAAGACCCGCAGGGTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACGGCCTTCGCAAGGCGGCGACAGCGTGGTGTTTGTGTGCTCAGCGGCAGCGGCACCGTCACCAACGTCACCCTCCGGCAGCCAGCTTCTCCGGGTGCCGTTGTGACCCTTCATGGAAGGTTCGAGATTCTATCCCTGTCAGGTTCATTTCTGCCGCCGCCGGCTCCGCCAGCCGCGTCAGGACTAGCCATTTACCTTGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGACCCCTGGTGGCTTCAGGTCCCGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTACCAGTTCCGGGAACCGGCGGATTAGGGTCGCCGGGAATTGCAGGGACTCAGCAGCAATCGCAATCGCAGCCGCAACAGCCACAACAGCTTGTGGGAGATCCCAATAGTTCTTCTCTCTTCCATGGAGTTCCTCAGAATCTTCTCAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCACTGCTCGCCCCTCTTTTTAA 930 0.5763 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGQKRDRDENTGSGGGATTPPHAGGDGQEPGSGDGGGSEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPVPGTGGLGSPGIAGTQQQSQSQPQQPQQLVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGTARPSF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00938 309 MobiDBLite consensus disorder prediction 19 55 - -
Phco1g00938 309 MobiDBLite consensus disorder prediction 238 285 - -
Phco1g00938 309 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 276 IPR014476 GO:0003680
Phco1g00938 309 CDD DUF296 114 225 IPR005175 -
Phco1g00938 309 MobiDBLite consensus disorder prediction 253 285 - -
Phco1g00938 309 FunFam AT-hook motif nuclear-localized protein 113 240 - -
Phco1g00938 309 Gene3D - 113 242 - -
Phco1g00938 309 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 245 - -
Phco1g00938 309 PIRSF ESCAROLA 16 309 IPR014476 GO:0003680
Phco1g00938 309 ProSiteProfiles PPC domain profile profile. 110 246 IPR005175 -
Phco1g00938 309 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 226 IPR005175 -
Phco1g00938 309 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00938 Phco-Chr1 9439755 9440684 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00938 1 9439755 9440684 Phco1g00938 1 9439755 9440684 ECH