Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00815 ATGGGAGAAGAAGCAAAAAGGTATGCAGTGGTGACAGGAGCTAACAAGGGAATTGGTTTTGGGATATGCAAGAAACTGGCTTTGAATGGAGTTGTGGTGGTGCTAACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCAATGGAAAGATTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAACTTGATGTCACTGACCCTCCTAGTGTTGCTGCTTTGGCACAATTCATCAAAACCAGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTTCCTGGTGGACTAGTAAATGGAGAGAATGTTCTTAGAAAGAAAAGGGGCGAAATATCGGATTGGAATATAATAGTTCCACAAAATTATGAGTTAGCTGAAGAATGTGTCGAAATAAATTTTTTTGGTGCAGAAAGAGTAACAGAAGCTCTTCTTCCTCTCCTTCAACGATCCACTTCACCTAGGATTGTCAATGTCTCCTCTAGAAGAGGGGTATTGAAGAATATACCAAATGAATGGGCAAGAGAAGTGTTGAGTGACATTGAAAACCTTACAAACAAAAAAATTCATGTGGTGTTGAGGGAGTTTCTGAAAGATTACAAGGTAGGATCATTGGAATCCAAGAACTGGCCACCTGTTCTTTCTGGATACACTATGTCAAAAACAGCTTTAAATTCCTACACAAGAATGTTGGCTAAGAAGTTTCCTCGTTTTCGCATAAATTGTTTGTGCCCTGACTTTGTCAAGACTGATCTAAACCAGAATGTAGGGTTTTTAACCATTGATGAAGGTGCCGAGTGTCCTGCCAGACTAGCTTTGTTACCAGATAATGGTCCTTCTGGTCTCTTTTTCTTAAAGAATGAACTACTTTCCTTTTTCTAA 885 0.3966 MGEEAKRYAVVTGANKGIGFGICKKLALNGVVVVLTARNEKRGLEAMERLKEFGLSDLLVFHQLDVTDPPSVAALAQFIKTRFGRLDILVNNAGVPGGLVNGENVLRKKRGEISDWNIIVPQNYELAEECVEINFFGAERVTEALLPLLQRSTSPRIVNVSSRRGVLKNIPNEWAREVLSDIENLTNKKIHVVLREFLKDYKVGSLESKNWPPVLSGYTMSKTALNSYTRMLAKKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPARLALLPDNGPSGLFFLKNELLSFF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00815 294 Gene3D - 3 293 - -
Phco1g00815 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 289 - -
Phco1g00815 294 CDD carb_red_PTCR-like_SDR_c 7 285 IPR045313 GO:0016616
Phco1g00815 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Phco1g00815 294 Pfam short chain dehydrogenase 8 167 IPR002347 -
Phco1g00815 294 Pfam short chain dehydrogenase 203 257 IPR002347 -
Phco1g00815 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Phco1g00815 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Phco1g00815 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Phco1g00815 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Phco1g00815 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Phco1g00815 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 278 IPR036291 -
Phco1g00815 294 FunFam (+)-neomenthol dehydrogenase 2 293 - -
Phco1g00815 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Phco1g00815 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Phco1g00815 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00815 Phco-Chr1 7572063 7577568 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00815 1 7572063 7577568 Phco1g00815 1 7572063 7577568 ECH
Phco3g02522 3 51920005 51922605 Phco1g00815 1 7572063 7577568 PCT