Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00624 ATGACTACTGCAAATGGTGGGACTGGGACGGAGGAGCACAAGAGAAAAACTAATGATCCTTTTCTTAAACATGGGGGTCAGCAAAACATGTCAAGATCACCTAAATTGTGCACACCTATTAAGAAGGAATGGTCAGAGAGTTTGCCAAATGACAATGTGATTGGTAATCAAGATAATCATTCGAATAGGTATGTAATTTCCTTAGCTGGATCTAGACTTCCTAGTACTAGTTTGTGTTCTACTATAGATTCTGAACACATTTTTGAAAAGTTGTCTGTTGCTATTAGGAATTATAAGAGCAAGAATACAGACTTAGTTAGTCACCCACATAATTCCAGACAGGAAAGGAATCAATTGACTACTGAGTCCAAGTATTATGGCTTAAATAGAGAAGTTGTTTCCAGGGTTGAAGAACAGATACCACTCAGGTTAAGTAAAGAACTTAAGGGAAATGATTCTGAAATTTGGGGTCTGAAGTCTCTCTCTGACAAGAGTGTTAATCAGAACTCACTGAAAGTCTCAGGGGATATAAGCCATATGGGCAAGGCTGTAATCTCAAATAATGCACATCTTATTAGCAGCATAACTCAGAGTACTTCATCTGCTTATCATTATCCTCAATCTGTAAAGCAAACAAGGAAGGGAAAGGGGGTTATTTGTGAAGATTTAGACAAAAGCTTCAGCATTGTAGGAGCACATAAGAGCCAGGAGGATGAGAAACCTTTTGCAGCCAAGTTTCAATCTGATACACTGAGGAGATCAAATGTTGACGATGATAATAAGCCTTTAGTGGAAGGAACTGTAGTATCTGGTAGCAATGAAATCAACTTAAGAGAGTGGCTGAAATGTGAATGTCATAAAGTGAAGAAATTAAGAAAGATTCATATATTTAAGCAGGTATTGGATTTGGTTGATTTTTCACACTCCCAAGGACTTGTCTTGCTAGATTTCCAACCATCTTGTTTCACGTTGTTGCCTTCAAGTAAGATTAAGTATATTGGTTCATATGGCCAACAACAGTTAGGTAATGAAGTCATGACCTGCAATGTGAATAGGAAAAGGTCTCTCGAACAGAGTATCCTTTCTTGCCATAGTTCGAGTACAAAGCAGCAAAAACTATTTGAGGAGACAGGATCTTTTAGGCAGTCGCATCAGTGCTCCTTTACTCATGACTGCAGGACAATAATGAATCAAACTGACTCTGACACAATCAGACCCTTGGAATCAAGGAGTAAAGAAAGTATGTGCCAAAATATTTCTAATTGTCAAGATACTTTTTCCAAAGAAAATCAGTTTATGTCTGCTTCCGTTCAGTTAGAAGAGAAGTCGTATTGTAGTCCAGAAATGCTGAATGATGGAGTCTGCACCTTGTCATCTAATATTTATAGCCTTGGAGTTCTTCTTTTTGAATTGCTGTGCAATATTGAGTCAGGGGAGGCGCATTCAACTGTGATGTTGGAGTTGTGTCATAGAATCTTACCGCCAAAATTTCTAGCAGAAAATCCAAAGGAAGCTGGCTTTTGTCTTTGGCTTCTGCATCCTGAACCGTCCTCTCGCCCTAATGCTAGGATCATTTTAGAATCTGAGTTTATACGCCGATCAGAGGAATCAAGTTCTATAGATGATGTTGGAGTATCTGATGATGAGGCTGAAACAGAAAAATTACTACATTTTCTAACTTCAATAAAAAAAGAAAAGATAAAACAGGCAGCCAAGTTGGAAGAACAGCTACATTTGTTGAATGAAGATATTCAGGAGGTAGAAAGAAGTTATTCATTTGGGACAGATTCAGTATTTCCATTGGCACAAATGAAAATTTTTGAAGTGAGAGAGAACAATTTACATTTTCAAGATTCTTCTGGTTCAGACATCAGTAGATCCATTCGAAGGTCATTTGGTGATGAAGAAAGATTTATGGCTAACATAAGTCAGCTAGAGAATTCTTACTTTTCCACGAGAATCCAAGTCCTGCTAAAAGATTCACCTATTTCAAGCAATGATAAAAATCTGATGGAAAATAGATGGAGATTGCCTCAAGGAGAGCATGCTAATAAGGAGCCTAGAAGAATTCATAATTCTGTTGGTTGTCTTGGATCCTTCTTTGAAGGTTTATGCAAGTTCGCTCGTTACAGTAAGTTCGAAGAGCGTGGCAGATTAAGAAATAGAGATCTGCTTAGTTCTTCCAATGTAATGTGTGCTTTAAGTTTTGACCGTGATGAGGACTACATGGCAGCAGGAGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAATGCTATTTCAAGCGATTCTGTTGACATCCAATATCCATTGGTTGAGATGACAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACACCTGCATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGACACTGGTCAGCCATTGTCCCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCATTTTTCTCTGGCAGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGCTCTGTCAAACTATGGAATATCAGCGAGAAAAATTCTCTGGGAACCATCAGGAACCCTGCCAATATATGCTGCGTTCAGTTCTCTTCTTACTCAACAAATCTTTTATTTTTTGGATCAGCTGATTTCAAGGTTTATGGTTATGATCTTCGTTACACTAGGATTCCATGGTGCACATTAACTGGTCATGGCAAAGCTGTTAGCTATGTAAAATTTATAGATGCTGAAGCAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTTAAAAAAACCAGCTCTACTGGTTTATCATCTGATGCATGTGTCTTAACCTATAAAGGTCATAGTAATGAAAAGAATTTTGCGGGATTATCTGTTTTTGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATCACAAATCACTGCCAGTGCCAATTGCTTCTCACAAATTTGAGTCAATTGATCCTATTTCTGGTCATCTAAGTAGTGGTGATAATAATGGACACTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTTGCCGCCAACTCAGTTGGAATTGTGAAACTGTTGCAGATGGTCTAG 3129 0.3829 MTTANGGTGTEEHKRKTNDPFLKHGGQQNMSRSPKLCTPIKKEWSESLPNDNVIGNQDNHSNRYVISLAGSRLPSTSLCSTIDSEHIFEKLSVAIRNYKSKNTDLVSHPHNSRQERNQLTTESKYYGLNREVVSRVEEQIPLRLSKELKGNDSEIWGLKSLSDKSVNQNSLKVSGDISHMGKAVISNNAHLISSITQSTSSAYHYPQSVKQTRKGKGVICEDLDKSFSIVGAHKSQEDEKPFAAKFQSDTLRRSNVDDDNKPLVEGTVVSGSNEINLREWLKCECHKVKKLRKIHIFKQVLDLVDFSHSQGLVLLDFQPSCFTLLPSSKIKYIGSYGQQQLGNEVMTCNVNRKRSLEQSILSCHSSSTKQQKLFEETGSFRQSHQCSFTHDCRTIMNQTDSDTIRPLESRSKESMCQNISNCQDTFSKENQFMSASVQLEEKSYCSPEMLNDGVCTLSSNIYSLGVLLFELLCNIESGEAHSTVMLELCHRILPPKFLAENPKEAGFCLWLLHPEPSSRPNARIILESEFIRRSEESSSIDDVGVSDDEAETEKLLHFLTSIKKEKIKQAAKLEEQLHLLNEDIQEVERSYSFGTDSVFPLAQMKIFEVRENNLHFQDSSGSDISRSIRRSFGDEERFMANISQLENSYFSTRIQVLLKDSPISSNDKNLMENRWRLPQGEHANKEPRRIHNSVGCLGSFFEGLCKFARYSKFEERGRLRNRDLLSSSNVMCALSFDRDEDYMAAGGVSKKIKIFDLNAISSDSVDIQYPLVEMTNKSKLSCVCWNTCIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSLADPKMFASGSDDCSVKLWNISEKNSLGTIRNPANICCVQFSSYSTNLLFFGSADFKVYGYDLRYTRIPWCTLTGHGKAVSYVKFIDAEAVVSASTDNSLKLWDLKKTSSTGLSSDACVLTYKGHSNEKNFAGLSVFDGYIACGSESNEVYCYHKSLPVPIASHKFESIDPISGHLSSGDNNGHFVSSVCWRKKSNMLVAANSVGIVKLLQMV 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00624 1042 Coils Coil 563 590 - -
Phco1g00624 1042 Gene3D Transferase(Phosphotransferase) domain 1 273 541 - -
Phco1g00624 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 816 858 IPR001680 GO:0005515
Phco1g00624 1042 SUPERFAMILY WD40 repeat-like 728 1038 IPR036322 GO:0005515
Phco1g00624 1042 MobiDBLite consensus disorder prediction 1 34 - -
Phco1g00624 1042 Pfam WD domain, G-beta repeat 811 849 IPR001680 GO:0005515
Phco1g00624 1042 Pfam WD domain, G-beta repeat 901 933 IPR001680 GO:0005515
Phco1g00624 1042 SMART serkin_6 220 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco1g00624 1042 Gene3D - 700 1042 IPR015943 GO:0005515
Phco1g00624 1042 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 902 935 - -
Phco1g00624 1042 SMART WD40_4 944 983 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 852 891 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 721 756 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 994 1040 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 767 806 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 895 933 IPR001680 GO:0005515
Phco1g00624 1042 SMART WD40_4 809 849 IPR001680 GO:0005515
Phco1g00624 1042 SUPERFAMILY Protein kinase-like (PK-like) 275 529 IPR011009 -
Phco1g00624 1042 ProSitePatterns Trp-Asp (WD) repeats signature. 920 934 IPR019775 -
Phco1g00624 1042 PANTHER PROTEIN SPA1-RELATED 2 12 1042 IPR044630 GO:0009640
Phco1g00624 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 902 942 IPR001680 GO:0005515
Phco1g00624 1042 PRINTS G protein beta WD-40 repeat signature 793 807 IPR020472 -
Phco1g00624 1042 PRINTS G protein beta WD-40 repeat signature 920 934 IPR020472 -
Phco1g00624 1042 PRINTS G protein beta WD-40 repeat signature 836 850 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00624 Phco-Chr1 5570557 5576441 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00624 1 5570557 5576441 Phco1g00624 1 5570557 5576441 ECH