Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00604 ATGCATACAAAGCTGTTAACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGCACACTTCCCCTTCTCTCTCGCGCCATCTTCTTCCCTCCCTCCAAGTTCCTCCGTACCGCACCGTTTAAAGCTCGCGCCTTTTCCGCTCGGGTCAGTGCCCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTCGATGATGAGGCCGAACTCAGTGACTGGGTCGATGAGTTGCGGACCGGCCGGGTCGACCGCTTCGCCCAACGGCTCGGCAGCGACGACGATGAAGGGCGCGAAATCCGGCCGCCGCGGAGGAATAACAATAGGGCTTCCTCCAATTTGGGGAAGAGGAGGGGCGAGGATTTGCTGAGGGGAAGGCAGAATGCGGGTGCGAGGAGAAAATTTCAACCTCGGAGTGACGACGATGAGGAAGTGGTGCAGAGTGGAAGGAAGTTCAAGGGTGGTGGCGTTAGAACGTTTCTCAGCGAAGATGATAGTGAAGATGAAAACAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGAAAACAAAACGGTCTGAAGCCGAAGACTGTTGAACCGACTCTTAGACCATCTTCTCCTGGAGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTTAGTCTCCCCACTGTCACTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACGGTTGTGCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACTGGAAAAACAGTTGCATTTTTGCTTCCGTCAATTGAAGTTGTGGTAAAGTCACCTCCAAGTGATCGTGATAATAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAACTTGCGAGTCAGGCTGCTACAGAGGCCAATAAACTGCTTAAGTATCATCCTGCCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAGCGATTGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCAGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTACGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTAGTGAGGAGACACATTCTCAGGTCCGCCAGACGCATTTAGTTGCTCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTTCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTGACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAATATATACATCGCCTGGGTAGAACTGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACCATAAAAGATTTGCCTATTGAGAAAGTTCCCGTGGTACCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGCATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCCATAGCTAAGCTAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTTCCAAATAG 2076 0.4721 MHTKLLTQIRLLHPLLPMKPRTLPLLSRAIFFPPSKFLRTAPFKARAFSARVSAHARDKLPVRPSKSLVDDEAELSDWVDELRTGRVDRFAQRLGSDDDEGREIRPPRRNNNRASSNLGKRRGEDLLRGRQNAGARRKFQPRSDDDEEVVQSGRKFKGGGVRTFLSEDDSEDENSDGSEEEEILNKSRTALFGKQNGLKPKTVEPTLRPSSPGGSDSYLSESRFDQCLVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDRDNRRPPIFVLVICPTRELASQAATEANKLLKYHPAIGVQVVIGGTRLALEQKRLQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGSEETHSQVRQTHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVSELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEKVPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKHRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRSK 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00604 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 618 IPR001650 -
Phco1g00604 691 PANTHER RNA HELICASE 179 620 - -
Phco1g00604 691 MobiDBLite consensus disorder prediction 93 109 - -
Phco1g00604 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 436 IPR014001 -
Phco1g00604 691 SMART ultradead3 241 454 IPR014001 -
Phco1g00604 691 SMART helicmild6 494 575 IPR001650 -
Phco1g00604 691 Gene3D - 445 672 IPR027417 -
Phco1g00604 691 Gene3D - 202 438 IPR027417 -
Phco1g00604 691 CDD DEADc_MSS116 229 438 - -
Phco1g00604 691 MobiDBLite consensus disorder prediction 118 153 - -
Phco1g00604 691 Pfam DEAD/DEAH box helicase 247 424 IPR011545 GO:0003676|GO:0005524
Phco1g00604 691 CDD SF2_C_DEAD 451 584 - -
Phco1g00604 691 MobiDBLite consensus disorder prediction 93 219 - -
Phco1g00604 691 Pfam Helicase conserved C-terminal domain 475 575 IPR001650 -
Phco1g00604 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 592 IPR027417 -
Phco1g00604 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00604 Phco-Chr1 5322597 5328840 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00604 1 5322597 5328840 Phco1g00604 1 5322597 5328840 ECH