Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00589 ATGGAGAATCTGATACAGTTGGTGAACAAAATCCAGAGAGCGTGCACTGCACTCGGTGATCACGGCGAGGAAAGCGCCATGCCTACTCTATGGGACGCCCTTCCGTCCATTGCTGTCGTTGGAGGACAGAGCTCTGGAAAATCTTCAGTGTTAGAGAGTGTTGTCGGAAAGGACTTTCTACCACGTGGATCTGGAATTGTTACTCGGCGTCCTCTTGTTTTGCAACTTCATAAGATTGACGAAGGGAGAGAATACGCTGAATTTATGCACCTTCCAAGGAAGAAATTTACTGATTTTGCTGCTGTTAGGCAGGAGATCGCTGACGAGACCGATAGAGAAACAGGACGCAACAAGGGTATTTCATCTGTCCCCATCCATCTCAGTATCTACTCCCCTCACGTTGTGAATCTGACACTGGTTGATCTTCCGGGACTAACAAAAGTCGCTGTTGATGGTCAGCATGAGGGCATTGTGCAAGACATTGAAAATATGGTTCGGAGTTTTATTGAAAAGCCGAATTGCATCATTTTGGCAATATCTCCTGCTAATCAAGACCTTGCAACCTCAGATGCAATTAAGATTTCCCGTGAAGTAGATCCTAAAGGGGAAAGGACATTCGGAGTGTTGACAAAGATTGATCTGATGGACAAGGGTACTGATGCGAGTGAGATCCTTGAAGGGAAATCATATAAGCTAAACTTCCCTTGGATTGGTGTTGTAAACCGCTCCCAAGCTGATATCAATAAACAAGTTGATATGATTGCTGCTCGGAAAAGAGAAAACGATTATTTTGCTAATACCCCAGAATACAGACATCTTGCTTCCAGAATGGGCTCTGTGCATCTAGGAAAGGTGCTATCCAAGCATTTGGAAACTGTCATCAAGTCTCGGATCCCAGGCCTACAATCACTCATTAACAAGACTATCATTGAATTAGAGACAGAATTGAACCGTATTGGCAAACCTATTGCTGCTGATACTGGAGGGAAGTTGTACACGATAATGGAAATCTGTCGAACTTTTGATCAGATATTTAAAGATCATCTTGATGGCATACGGCCTGGTGGGGAGAAAATTTACCAAGTATTTGATAATCAATTTCCAGCATCTTTAAAACGGCTGCAGTTTGACAAACATTTATCAATGGACAATGTGCGGAAACTAATAACTGAAGCAGATGGTTATCAACCTCATCTCATAGCTCCTGAGCAAGGATACCGACGCCTTATCGAATCTTGCTTGGTATCAATTAGGGGGCCTGCTGAAGCAGCTGTTGATGCGGTTCACGGAATTTTGAAGGATTTGATTCAGAAATCTATGAGTGAGACAATGGAATTAAAGCAGTATCCCACCTTGAAGGTAGAACTCGGAAGTGCAGCTGTTGATTCGTTGGAGAGGATGAGAGAAGAAAGTAAGAAAGCAACTCTGCTTTTGGTGGACATGGAGTATGGCTATTTGACTGTTGAATTTTTCCGCAAACTTCCCCAAGACGCAGAAAAGGGTGGAAATCCAACTCATTCACTTTTCGACAGATATAATGATGCTTATCTTCGACGAATTGCTACCACGGTCCTGTCCTATGTGAACATGGTATGTGGAACCCTGAGGAATACCATTCCCAAGTCCGTAGTTTATTGTCAAGTGCGTGAGGCTAAGCGCAGCTTACTGGATCATTTCTTTACAGAATTGGGGAAAAAGGAGGGAAAACAATTAGCTTCACTTCTAAATGAGGACCCAGCAATCATGCAGCGCCGTACCTCCCTGGCAAGGAGGCTAGAGCTATACAGAAGTGCACAAACAGAAATTGAGGCAGTTGCATGGGAAAGGTAG 1830 0.4372 MENLIQLVNKIQRACTALGDHGEESAMPTLWDALPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGREYAEFMHLPRKKFTDFAAVRQEIADETDRETGRNKGISSVPIHLSIYSPHVVNLTLVDLPGLTKVAVDGQHEGIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKIDLMDKGTDASEILEGKSYKLNFPWIGVVNRSQADINKQVDMIAARKRENDYFANTPEYRHLASRMGSVHLGKVLSKHLETVIKSRIPGLQSLINKTIIELETELNRIGKPIAADTGGKLYTIMEICRTFDQIFKDHLDGIRPGGEKIYQVFDNQFPASLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVSIRGPAEAAVDAVHGILKDLIQKSMSETMELKQYPTLKVELGSAAVDSLERMREESKKATLLLVDMEYGYLTVEFFRKLPQDAEKGGNPTHSLFDRYNDAYLRRIATTVLSYVNMVCGTLRNTIPKSVVYCQVREAKRSLLDHFFTELGKKEGKQLASLLNEDPAIMQRRTSLARRLELYRSAQTEIEAVAWER 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00589 609 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Phco1g00589 609 Gene3D - 1 308 IPR027417 -
Phco1g00589 609 FunFam Dynamin-related protein 5A 331 585 - -
Phco1g00589 609 CDD DLP_1 34 299 IPR001401 GO:0003924|GO:0005525
Phco1g00589 609 Gene3D Dynamin, middle domain 331 585 - -
Phco1g00589 609 PRINTS Dynamin signature 34 52 IPR022812 -
Phco1g00589 609 PRINTS Dynamin signature 223 242 IPR022812 -
Phco1g00589 609 PRINTS Dynamin signature 200 216 IPR022812 -
Phco1g00589 609 PRINTS Dynamin signature 59 76 IPR022812 -
Phco1g00589 609 PRINTS Dynamin signature 131 148 IPR022812 -
Phco1g00589 609 PRINTS Dynamin signature 181 199 IPR022812 -
Phco1g00589 609 Pfam Dynamin GTPase effector domain 513 605 IPR003130 GO:0003924|GO:0005525
Phco1g00589 609 Pfam Dynamin central region 220 487 IPR000375 -
Phco1g00589 609 SMART GED_2 512 605 IPR003130 GO:0003924|GO:0005525
Phco1g00589 609 ProSiteProfiles GED domain profile. 517 609 IPR020850 -
Phco1g00589 609 PANTHER DYNAMIN 2 605 IPR022812 -
Phco1g00589 609 FunFam dynamin-related protein 1E 1 308 - -
Phco1g00589 609 SMART dynamin_3 1 250 IPR001401 GO:0003924|GO:0005525
Phco1g00589 609 Pfam Dynamin family 37 212 IPR045063 -
Phco1g00589 609 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 299 IPR030381 GO:0005525
Phco1g00589 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 307 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00589 Phco-Chr1 5112811 5123655 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00589 1 5112811 5123655 Phco1g00589 1 5112811 5123655 ECH